Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AL360271.2-201ENST00000447710 161 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 snoU13.4-201ENST00000458916 104 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC087588.1-201ENST00000462203 316 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RPL7P42-201ENST00000481005 679 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC097473.1-201ENST00000508142 408 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC026782.1-201ENST00000512952 449 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RNU6-615P-201ENST00000516065 106 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.670-201ENST00000516255 105 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.708-201ENST00000516950 96 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 IGKV2-19-201ENST00000518132 283 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RNU6-988P-201ENST00000519081 107 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 MIR4311-201ENST00000580794 100 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 RN7SL753P-201ENST00000581238 290 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC105254.2-201ENST00000603636 436 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AP000942.4-201ENST00000604811 241 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AP000654.2-201ENST00000605633 586 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AL360181.4-201ENST00000621752 134 ntBASIC4.37□□□□□ -1.71
CCDC140Q96MF4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC140Q96MF4 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC104964.3-201ENST00000606115 2860 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC068870.1-201ENST00000563737 2455 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC093671.1-201ENST00000624981 2929 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 SRRM1P3-201ENST00000426911 2678 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.404-201ENST00000383978 102 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 RNU6-890P-201ENST00000384121 107 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 RNF10P1-201ENST00000418589 369 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 HMGB1P9-201ENST00000429856 646 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC068287.1-201ENST00000430283 295 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC236972.1-201ENST00000433225 199 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC093414.1-201ENST00000434712 514 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AL137792.2-201ENST00000443484 235 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 RANP8-201ENST00000444720 713 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 RPL31P60-201ENST00000478450 367 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 RN7SL284P-201ENST00000498823 275 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AL359273.1-201ENST00000510918 627 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC104576.1-201ENST00000524225 88 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 DNAJC8P1-201ENST00000554535 372 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 SNORD39.4-201ENST00000620099 78 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 SDAD1P2-201ENST00000441308 2028 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 MTND4P1-201ENST00000457501 1466 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 OR4F13P-202ENST00000560066 2054 ntBASIC4.36□□□□□ -1.71
CCDC140Q96MF4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
CCDC140Q96MF4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC140Q96MF4 AC015799.1-201ENST00000622996 3122 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms