Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC146944.2-203ENST00000502493 354 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 ARL2BPP4-201ENST00000506854 471 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC079140.3-201ENST00000511111 550 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC139495.1-202ENST00000513164 354 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 MIR2116-201ENST00000517221 80 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 OR8R1P-201ENST00000543943 764 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC034268.2-201ENST00000571784 482 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 RPL23AP87-202ENST00000573039 466 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AL359999.1-201ENST00000604513 294 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC108479.2-201ENST00000617314 601 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC079597.1-201ENST00000624306 508 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 AC092104.1-201ENST00000497346 1441 ntBASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4CQ96CF2 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 U3.20-201ENST00000390909 217 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC007899.1-201ENST00000412776 775 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC092447.6-201ENST00000414578 210 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 CDK8P2-201ENST00000415020 547 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 USP9YP13-201ENST00000417797 480 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC112653.1-201ENST00000443851 386 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AL645939.1-201ENST00000453429 797 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC098824.1-201ENST00000453565 980 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC099563.1-201ENST00000456086 418 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC025554.1-201ENST00000505641 188 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 MTND4LP31-201ENST00000514859 294 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 RNU6-1003P-201ENST00000517099 105 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AP002963.1-201ENST00000530590 184 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC022878.1-201ENST00000530684 149 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 SETP2-201ENST00000553886 926 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC090616.5-202ENST00000582111 297 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC011451.2-201ENST00000604303 598 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AL139286.1-201ENST00000604465 483 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AL031176.1-201ENST00000604554 466 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC104073.3-201ENST00000610942 955 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AC098679.4-201ENST00000624241 654 ntBASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4CQ96CF2 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.84□□□□□ -1.64
CHMP4CQ96CF2 AC244517.1-201ENST00000606030 2086 ntBASIC4.84□□□□□ -1.64
CHMP4CQ96CF2 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.84□□□□□ -1.64
CHMP4CQ96CF2 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 TEX21P-201ENST00000447107 1476 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 Y_RNA.359-201ENST00000365498 102 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 MIR134-201ENST00000385258 73 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 SNORA40.3-201ENST00000390964 122 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AL138880.1-201ENST00000405824 642 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 OR5BE1P-201ENST00000425977 939 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 RPL7P2-201ENST00000427639 268 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 MTND4LP10-201ENST00000435146 291 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 snoU109.1-201ENST00000459339 135 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AL132838.2-201ENST00000492041 314 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 RN7SL604P-201ENST00000492589 296 ntBASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4CQ96CF2 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms