Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 RNU6-730P-201ENST00000383954 104 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MIR181A1-201ENST00000385026 110 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC004987.3-201ENST00000413879 771 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC127537.2-201ENST00000439258 465 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 RPL17P49-201ENST00000443728 411 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MRPL48P1-201ENST00000445390 636 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AP1S2P1-201ENST00000457344 379 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AP001992.1-205ENST00000462248 379 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AF186190.1-201ENST00000517470 480 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 PTP4A1P6-201ENST00000531034 478 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AL391840.1-201ENST00000571144 367 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 OR4G1P-201ENST00000588632 938 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 CKS1BP3-201ENST00000600888 237 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 RNU6-87P-201ENST00000607561 108 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 OR10AB1P-201ENST00000609613 938 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MIR6852-201ENST00000621699 66 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 CR381653.2-201ENST00000624041 768 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC010149.2-201ENST00000637608 315 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 ZNF734P-201ENST00000419494 1534 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 DDX18P3-201ENST00000404856 2007 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 AC139769.1-204ENST00000472297 1931 ntBASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.05□□□□□ -1.6
SMC1BQ8NDV3 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 FRG1BP-201ENST00000278882 761 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 Y_RNA.46-201ENST00000362695 102 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 MRPL42P2-201ENST00000403169 426 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 RPL7P25-201ENST00000404151 721 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 MIR548F1-201ENST00000408667 84 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 RNU2-8P-201ENST00000410727 190 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 MTND4LP11-201ENST00000422184 280 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL138785.1-201ENST00000425821 331 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 OR51AB1P-201ENST00000429046 620 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 PSMA2P3-201ENST00000429685 675 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC009961.2-201ENST00000435771 251 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 UBE2V1P8-201ENST00000437166 265 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 RPL23AP81-201ENST00000455252 467 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 MTND1P3-201ENST00000484956 952 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC006390.1-201ENST00000508068 283 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 Y_RNA.672-201ENST00000516289 104 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 RNU6-201P-201ENST00000517100 61 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC134698.4-201ENST00000523451 826 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL133241.1-201ENST00000556832 487 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 HMGN1P30-201ENST00000589286 268 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 DUXAP4-201ENST00000603046 613 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC090970.3-201ENST00000612566 866 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL592295.2-201ENST00000612578 206 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 LINC00901.1-201ENST00000617252 152 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL596245.1-201ENST00000618994 362 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AL158209.2-201ENST00000619266 216 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms