Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SKA3Q8IX90 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
SKA3Q8IX90 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
SKA3Q8IX90 AL049781.1-201ENST00000623195 3585 ntBASIC2.94□□□□□ -1.94
SKA3Q8IX90 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
SKA3Q8IX90 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SKA3Q8IX90 RNU6-1249P-201ENST00000363237 111 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 RNU6-560P-201ENST00000364007 108 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 RNU6-1122P-201ENST00000384449 107 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 MIR183-201ENST00000384958 110 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 USP9YP11-201ENST00000427537 717 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 VDAC1P3-201ENST00000434069 851 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 HIGD1AP11-201ENST00000438361 280 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 ELOCP13-201ENST00000443934 329 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AL606517.1-201ENST00000446914 387 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 MTCO2P25-201ENST00000447065 681 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 PTENP1-201ENST00000447117 1215 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 GAPDHP27-201ENST00000447427 1020 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 HMGN2P16-201ENST00000456802 261 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 MTCO3P35-201ENST00000485582 781 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SKA3Q8IX90 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SKA3Q8IX90 HMGB1P28-201ENST00000507778 552 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 APOOP4-201ENST00000513530 597 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 RNY4P37-201ENST00000516225 96 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC005476.1-201ENST00000554427 397 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC015917.1-201ENST00000579654 510 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC245036.5-201ENST00000596330 847 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 AC018755.4-201ENST00000619715 454 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 U6.105-201ENST00000637379 88 ntBASIC2.93□□□□□ -1.94
SKA3Q8IX90 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SKA3Q8IX90 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SKA3Q8IX90 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 FAM35CP-201ENST00000554755 2470 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 RNU4-92P-201ENST00000363783 136 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 Y_RNA.192-201ENST00000363977 102 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 RNU1-33P-201ENST00000364249 162 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 Y_RNA.465-201ENST00000384293 102 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 RPL21P3-201ENST00000395517 478 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SKA3Q8IX90 RN7SKP58-201ENST00000411010 305 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 RPS3AP25-201ENST00000411660 793 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 RPS7P15-201ENST00000415804 584 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 OR1AA1P-201ENST00000419597 916 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC097713.2-201ENST00000430199 356 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 MTND2P5-201ENST00000432656 1006 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 ISCA1P2-201ENST00000438679 421 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 MTND2P20-201ENST00000440805 661 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 PRDX3P3-201ENST00000447765 522 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 TRGVB-201ENST00000453257 471 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC146507.2-201ENST00000460608 476 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC008155.2-201ENST00000464337 397 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 RPS26P21-201ENST00000475397 348 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC011611.1-201ENST00000552179 197 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 NCAPGP2-201ENST00000557911 754 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC034268.2-201ENST00000571784 482 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 MIR4276-201ENST00000584832 70 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 CCDC58P3-201ENST00000590792 430 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 BNIP3P26-201ENST00000600827 554 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 XIAPP1-201ENST00000603162 600 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AL162713.1-201ENST00000604480 262 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC069304.2-201ENST00000605154 435 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC128687.1-201ENST00000605304 619 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC131235.4-201ENST00000609288 620 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AC243773.3-201ENST00000613270 256 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms