Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.22-201ENST00000362492 102 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 RNU6-845P-201ENST00000362578 103 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 Y_RNA.72-201ENST00000362894 103 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 SNORD51-201ENST00000384320 80 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 Y_RNA.535-201ENST00000384612 99 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 MT-TC-201ENST00000387405 66 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 RNU6-332P-201ENST00000391193 108 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 RNU2-62P-201ENST00000410868 191 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 RN7SKP247-201ENST00000411094 308 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 HMGN1P24-201ENST00000412282 298 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 SNRPFP1-201ENST00000414761 252 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA4Q00056 SDCBPP3-201ENST00000419629 891 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC008850.1-201ENST00000427546 362 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 OR4K11P-201ENST00000431829 904 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 RPL34P6-201ENST00000432390 345 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 RPS20P1-201ENST00000434853 354 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 H2AFZP5-201ENST00000446960 382 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AL031584.1-201ENST00000447169 754 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC006480.1-201ENST00000449887 378 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA4Q00056 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
HOXA4Q00056 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA4Q00056 AL591473.1-201ENST00000464297 313 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA4Q00056 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA4Q00056 PSMA2P1-201ENST00000526365 646 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC103843.2-201ENST00000530523 682 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA4Q00056 ANP32BP3-201ENST00000559213 706 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 OR4K8P-201ENST00000578842 1048 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC105224.1-201ENST00000587055 421 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AP001029.3-201ENST00000588063 596 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 AC068790.4-201ENST00000602474 263 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 SSX9-202ENST00000608568 580 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA4Q00056 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC009233.1-201ENST00000616477 371 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA4Q00056 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA4Q00056 AC005332.5-201ENST00000591222 2919 ntBASIC3.87□□□□□ -1.79
HOXA4Q00056 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
HOXA4Q00056 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA4Q00056 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA4Q00056 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA4Q00056 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC079741.1-201ENST00000321498 212 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA4Q00056 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HOXA4Q00056 Y_RNA.255-201ENST00000364581 97 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 RNU6-996P-201ENST00000365438 107 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 Y_RNA.367-201ENST00000365544 101 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 RNA5SP151-201ENST00000365632 117 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 SNORA70F-201ENST00000384142 135 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 RNU6-1011P-201ENST00000384668 107 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 RNU6-278P-201ENST00000390945 109 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 MIR298-201ENST00000401212 88 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 RN7SKP167-201ENST00000411047 285 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AC016769.2-201ENST00000414815 475 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AL590139.1-201ENST00000416267 400 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 PDCL2P1-201ENST00000419302 352 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 MTCYBP8-201ENST00000422855 651 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 ARL2BPP10-201ENST00000446487 531 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 HMGB3P21-201ENST00000452483 547 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AL356010.1-201ENST00000456364 102 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA4Q00056 SCARNA10-201ENST00000459255 330 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AC108751.2-201ENST00000469993 231 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AL163973.1-201ENST00000484753 577 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC068305.1-201ENST00000497406 726 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA4Q00056 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AC022790.1-201ENST00000522872 204 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 SUB1P1-201ENST00000524415 382 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 PTP4A1P6-201ENST00000531034 478 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA4Q00056 GSTP1P1-201ENST00000548078 319 ntBASIC3.86□□□□□ -1.79
HOXA4Q00056 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXA4Q00056 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms