Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC2.81□□□□□ -1.96
COL18A1P39060 RNU1-138P-201ENST00000384093 164 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 SPA17P1-201ENST00000416656 452 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AC012498.1-201ENST00000424037 437 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 RPL30P3-201ENST00000424262 333 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AC093151.1-201ENST00000427711 313 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 Z82205.1-201ENST00000428456 297 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AL031663.1-201ENST00000437445 219 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.8□□□□□ -1.96
COL18A1P39060 RPL34P26-201ENST00000445636 354 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AC012170.1-201ENST00000495139 359 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC2.8□□□□□ -1.96
COL18A1P39060 RNU6-1308P-201ENST00000516817 103 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AC091515.1-201ENST00000548110 679 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 MIR548Y-201ENST00000582739 110 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.8□□□□□ -1.96
COL18A1P39060 BNIP3P7-201ENST00000605641 516 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 VN1R7P-201ENST00000619242 903 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 LRRC77P-213ENST00000637727 880 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL18A1P39060 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL18A1P39060 MTCO1P14-201ENST00000441695 1559 ntBASIC2.8□□□□□ -1.96
COL18A1P39060 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 RNU1-51P-201ENST00000365345 176 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 MIR7-1-201ENST00000384871 110 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.79□□□□□ -1.96
COL18A1P39060 AC108667.1-201ENST00000428618 249 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 XKRYP6-201ENST00000440468 1116 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.79□□□□□ -1.96
COL18A1P39060 XKRYP3-201ENST00000442113 1116 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.79□□□□□ -1.96
COL18A1P39060 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 SNORA70.14-201ENST00000516205 110 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 RNU6-1004P-201ENST00000516584 111 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.79□□□□□ -1.96
COL18A1P39060 MIR4781-201ENST00000585250 76 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 AC022387.2-201ENST00000604050 448 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 AC090525.3-201ENST00000605601 189 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.79□□□□□ -1.96
COL18A1P39060 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.79□□□□□ -1.96
COL18A1P39060 AC116563.2-201ENST00000624751 535 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL18A1P39060 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL18A1P39060 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 Y_RNA.40-201ENST00000362645 93 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 NDUFB4P5-201ENST00000415445 361 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 MTND4P11-201ENST00000417020 1058 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC2.79□□□□□ -1.96
COL18A1P39060 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 RPL38P4-201ENST00000502376 214 ntBASIC2.79□□□□□ -1.96
COL18A1P39060 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
COL18A1P39060 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL18A1P39060 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL18A1P39060 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.79□□□□□ -1.96
COL18A1P39060 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL18A1P39060 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
COL18A1P39060 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
COL18A1P39060 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.78□□□□□ -1.96
COL18A1P39060 RNU6-244P-201ENST00000391028 104 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.78□□□□□ -1.96
COL18A1P39060 EI24P1-201ENST00000416584 867 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 MTCO1P57-201ENST00000432182 261 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 UBE2V2P3-201ENST00000433562 437 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 TRBV26-201ENST00000456572 344 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 SUMO1P1-201ENST00000497904 306 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.78□□□□□ -1.96
COL18A1P39060 AC026412.2-201ENST00000512270 1075 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 AC010198.2-201ENST00000550612 259 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 AC074029.2-201ENST00000551045 634 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 OR4U1P-201ENST00000554958 912 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 AMZ2P1-203ENST00000565833 850 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 MTCO3P13-201ENST00000577757 781 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 MIR7973-1-201ENST00000614683 76 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL18A1P39060 MTND4P35-201ENST00000604257 1375 ntBASIC2.78□□□□□ -1.96
COL18A1P39060 RNF6P1-201ENST00000444889 1784 ntBASIC2.78□□□□□ -1.97
COL18A1P39060 U3.15-201ENST00000365398 212 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 RNU6-31P-201ENST00000384388 108 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 MIR124-3-201ENST00000384866 87 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.77□□□□□ -1.97
COL18A1P39060 AL355994.1-201ENST00000424379 260 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AL353093.1-201ENST00000441292 436 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 HMGB1P47-201ENST00000511281 589 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.77□□□□□ -1.97
COL18A1P39060 MIR5002-201ENST00000584713 97 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AL160237.3-201ENST00000604114 1013 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC2.77□□□□□ -1.97
COL18A1P39060 snoU13.31-201ENST00000607291 104 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.77□□□□□ -1.97
COL18A1P39060 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AC015726.3-201ENST00000624501 418 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 ZNF542P-204ENST00000482727 1305 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL18A1P39060 Y_RNA.796-201ENST00000364268 102 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 Y_RNA.799-201ENST00000364992 102 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 SNORD6-201ENST00000365444 73 ntBASIC2.77□□□□□ -1.97
COL18A1P39060 MIR421-201ENST00000365696 85 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms