Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
MSX2P35548 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 AC097714.1-201ENST00000511272 1647 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC016588.2-201ENST00000632484 3021 ntBASIC4.47□□□□□ -1.69
MSX2P35548 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 SNORA17.1-201ENST00000362945 126 ntBASIC4.47□□□□□ -1.69
MSX2P35548 SNORA63C-201ENST00000364578 129 ntBASIC4.47□□□□□ -1.69
MSX2P35548 RNA5SP455-201ENST00000365190 119 ntBASIC4.47□□□□□ -1.69
MSX2P35548 RNU6-996P-201ENST00000365438 107 ntBASIC4.47□□□□□ -1.69
MSX2P35548 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 MIR606-201ENST00000384851 96 ntBASIC4.47□□□□□ -1.69
MSX2P35548 MIR921-201ENST00000401133 56 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AL356967.1-201ENST00000406305 431 ntBASIC4.47□□□□□ -1.69
MSX2P35548 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.47□□□□□ -1.69
MSX2P35548 NDUFB4P5-201ENST00000415445 361 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC127526.1-201ENST00000417526 366 ntBASIC4.47□□□□□ -1.69
MSX2P35548 DUTP6-201ENST00000425573 462 ntBASIC4.47□□□□□ -1.69
MSX2P35548 BRK1P2-201ENST00000442875 223 ntBASIC4.47□□□□□ -1.69
MSX2P35548 DDX3P2-201ENST00000446138 111 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC073587.1-201ENST00000447093 876 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC073415.1-201ENST00000449240 153 ntBASIC4.47□□□□□ -1.69
MSX2P35548 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 RPL7AP28-201ENST00000464513 571 ntBASIC4.47□□□□□ -1.69
MSX2P35548 RN7SL41P-201ENST00000476144 297 ntBASIC4.47□□□□□ -1.69
MSX2P35548 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.47□□□□□ -1.69
MSX2P35548 RPL23AP41-201ENST00000484754 458 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC055855.1-201ENST00000489563 579 ntBASIC4.47□□□□□ -1.69
MSX2P35548 RPS15AP36-201ENST00000492022 382 ntBASIC4.47□□□□□ -1.69
MSX2P35548 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.47□□□□□ -1.69
MSX2P35548 AC005726.1-201ENST00000494679 427 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC021146.1-201ENST00000511202 716 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.47□□□□□ -1.69
MSX2P35548 BX510359.5-201ENST00000515651 304 ntBASIC4.47□□□□□ -1.69
MSX2P35548 RNA5SP360-201ENST00000516555 118 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 AP000907.2-201ENST00000530827 353 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.47□□□□□ -1.69
MSX2P35548 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.47□□□□□ -1.69
MSX2P35548 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
MSX2P35548 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.47□□□□□ -1.69
MSX2P35548 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.47□□□□□ -1.69
MSX2P35548 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 AL121655.1-201ENST00000605811 308 ntBASIC4.47□□□□□ -1.69
MSX2P35548 AC093913.1-201ENST00000614178 329 ntBASIC4.47□□□□□ -1.69
MSX2P35548 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 AP000843.1-201ENST00000624880 701 ntBASIC4.47□□□□□ -1.69
MSX2P35548 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 AC134503.1-201ENST00000633048 54 ntBASIC4.47□□□□□ -1.69
MSX2P35548 BMS1P21-201ENST00000634565 365 ntBASIC4.47□□□□□ -1.69
MSX2P35548 MTND5P42-201ENST00000637720 498 ntBASIC4.47□□□□□ -1.69
MSX2P35548 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
MSX2P35548 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.47□□□□□ -1.69
MSX2P35548 MTND5P28-201ENST00000438005 1594 ntBASIC4.47□□□□□ -1.69
MSX2P35548 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 OR14L1P-202ENST00000641545 3009 ntBASIC4.47□□□□□ -1.69
MSX2P35548 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.47□□□□□ -1.69
MSX2P35548 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSX2P35548 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
MSX2P35548 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
MSX2P35548 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.46□□□□□ -1.69
MSX2P35548 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
MSX2P35548 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSX2P35548 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSX2P35548 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
MSX2P35548 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
MSX2P35548 AC022893.2-201ENST00000564832 3296 ntBASIC4.46□□□□□ -1.7
MSX2P35548 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.46□□□□□ -1.7
MSX2P35548 AL139811.1-201ENST00000424779 2299 ntBASIC4.46□□□□□ -1.7
MSX2P35548 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX2P35548 MTND4P27-201ENST00000450813 1354 ntBASIC4.46□□□□□ -1.7
MSX2P35548 RNA5SP183-201ENST00000362452 119 ntBASIC4.46□□□□□ -1.7
MSX2P35548 RNA5SP28-201ENST00000363841 119 ntBASIC4.46□□□□□ -1.7
MSX2P35548 RNA5SP151-201ENST00000365632 117 ntBASIC4.46□□□□□ -1.7
MSX2P35548 Y_RNA.384-201ENST00000383909 102 ntBASIC4.46□□□□□ -1.7
MSX2P35548 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
MSX2P35548 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 RPL31P45-201ENST00000419532 356 ntBASIC4.46□□□□□ -1.7
MSX2P35548 MTCYBP8-201ENST00000422855 651 ntBASIC4.46□□□□□ -1.7
MSX2P35548 PDSS1P1-201ENST00000422953 1114 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AL645608.4-201ENST00000423619 154 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX2P35548 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.46□□□□□ -1.7
MSX2P35548 AL590233.1-201ENST00000430017 456 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.46□□□□□ -1.7
MSX2P35548 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.46□□□□□ -1.7
MSX2P35548 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AC236972.2-201ENST00000434979 310 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSX2P35548 CEACAMP9-201ENST00000442990 513 ntBASIC4.46□□□□□ -1.7
MSX2P35548 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.46□□□□□ -1.7
MSX2P35548 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms