Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TIMM9P1-201ENST00000436122 256 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 UBE2V1P13-201ENST00000436983 439 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC108734.1-201ENST00000439549 399 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD3P31249 RAC1P7-201ENST00000445367 377 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AL136380.1-201ENST00000447970 162 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 RNU6-420P-201ENST00000458780 107 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 RPL21P126-201ENST00000470049 478 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AC017037.2-201ENST00000513850 890 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 RNA5SP497-201ENST00000516081 97 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 RNA5SP464-201ENST00000516251 108 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 RNU6-358P-201ENST00000516564 75 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
HOXD3P31249 AL109766.1-201ENST00000555080 552 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC034105.3-201ENST00000565294 442 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC084783.1-201ENST00000565846 910 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 BNIP3P33-201ENST00000598912 569 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AL049634.3-201ENST00000604968 457 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC093788.1-201ENST00000609356 927 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC006329.2-201ENST00000611491 394 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 RAD17P1-201ENST00000418130 2042 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 MAPK10-286ENST00000641208 8747 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD3P31249 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 AC009902.3-201ENST00000606235 2172 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 RNA5SP509-201ENST00000364577 119 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 RNU6-359P-201ENST00000365466 108 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 MT-TC-201ENST00000387405 66 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 RPS3AP24-201ENST00000407896 734 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 RNU2-9P-201ENST00000410194 145 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AC092447.6-201ENST00000414578 210 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD3P31249 PSMA2P3-201ENST00000429685 675 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 HMGB3P12-201ENST00000438745 556 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 MTND5P20-201ENST00000448677 143 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 FDX1P2-201ENST00000450769 375 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD3P31249 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD3P31249 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD3P31249 AP000926.1-201ENST00000479573 241 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 RPS29P25-201ENST00000481709 171 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 AC008628.2-201ENST00000502605 298 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AC117522.1-201ENST00000509821 380 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD3P31249 RNU6-1281P-201ENST00000516223 105 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD3P31249 AC090572.1-201ENST00000519251 160 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD3P31249 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD3P31249 AC104383.1-201ENST00000530297 370 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD3P31249 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD3P31249 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD3P31249 AC008752.3-201ENST00000588113 712 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AP003117.2-201ENST00000606010 545 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 MIR6716-201ENST00000613413 80 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD3P31249 AP005019.3-201ENST00000620418 560 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD3P31249 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 AL391684.1-202ENST00000641293 1636 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.54□□□□□ -1.84
HOXD3P31249 AL672167.1-205ENST00000641112 3080 ntBASIC3.54□□□□□ -1.84
HOXD3P31249 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD3P31249 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
HOXD3P31249 PNPT1P2-201ENST00000456768 2050 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 DHX9P1-201ENST00000436565 3076 ntBASIC3.53□□□□□ -1.84
HOXD3P31249 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
HOXD3P31249 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD3P31249 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms