Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ZNF415P1-201ENST00000582279 1166 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.36□□□□□ -1.87
PTPN4P29074 AC004987.4-201ENST00000603383 338 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AL160237.3-201ENST00000604114 1013 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AC105148.1-201ENST00000604961 409 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AC010738.1-201ENST00000604970 987 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AC055876.5-201ENST00000605667 259 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AC009237.15-201ENST00000610252 501 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 U1.23-201ENST00000610293 146 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 RNU1-68P-201ENST00000615382 146 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 U1.39-201ENST00000621562 146 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 AC107982.1-201ENST00000507171 1300 ntBASIC3.36□□□□□ -1.87
PTPN4P29074 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PTPN4P29074 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PTPN4P29074 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN4P29074 CDR1-202ENST00000625883 1485 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN4P29074 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN4P29074 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN4P29074 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN4P29074 RNU6-712P-201ENST00000410558 100 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC007899.1-201ENST00000412776 775 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 OR4K6P-201ENST00000416478 897 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN4P29074 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.35□□□□□ -1.87
PTPN4P29074 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.35□□□□□ -1.87
PTPN4P29074 AC005019.1-201ENST00000436455 431 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 MTCYBP34-201ENST00000439552 670 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN4P29074 AC008264.1-201ENST00000447612 367 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC112492.1-201ENST00000449607 712 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 BX510359.1-201ENST00000456973 237 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 ARPC3P2-201ENST00000457786 533 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.35□□□□□ -1.87
PTPN4P29074 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN4P29074 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 GTF2IP9-201ENST00000502460 301 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.35□□□□□ -1.87
PTPN4P29074 IGHV3-76-201ENST00000522465 295 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.35□□□□□ -1.87
PTPN4P29074 AC125611.1-201ENST00000549563 229 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN4P29074 AC080013.4-201ENST00000607624 649 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.35□□□□□ -1.87
PTPN4P29074 AL138478.1-201ENST00000612252 832 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC068831.7-201ENST00000616954 363 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN4P29074 AP003355.3-201ENST00000623465 114 ntBASIC3.35□□□□□ -1.87
PTPN4P29074 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.35□□□□□ -1.87
PTPN4P29074 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.35□□□□□ -1.87
PTPN4P29074 MTCO1P23-201ENST00000415223 1526 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AC032011.1-201ENST00000611703 1549 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PTPN4P29074 SGO1P2-201ENST00000429458 1589 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.34□□□□□ -1.87
PTPN4P29074 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN4P29074 AC008264.2-201ENST00000610193 3731 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 RNU6-216P-201ENST00000363282 104 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 U3.6-201ENST00000363622 211 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 RNU6-1074P-201ENST00000383995 104 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 RNU6-584P-201ENST00000410350 95 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 LUZP4P1-201ENST00000415420 344 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 NDUFB4P5-201ENST00000415445 361 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 OR10R1P-201ENST00000441524 1141 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 MTCO2P25-201ENST00000447065 681 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 MTND2P19-201ENST00000449129 1012 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 AC097262.1-201ENST00000452559 548 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN4P29074 AC008155.2-201ENST00000464337 397 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 RPS4XP10-201ENST00000465034 731 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 RN7SL807P-201ENST00000470923 297 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 HMGN2P13-201ENST00000476476 274 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AC025518.1-201ENST00000479856 347 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN4P29074 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 RNA5SP217-201ENST00000515959 91 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 SCARNA20.6-201ENST00000517251 106 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN4P29074 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN4P29074 MTCYBP23-201ENST00000558717 1102 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.34□□□□□ -1.87
PTPN4P29074 AC016877.3-201ENST00000606778 504 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AL110115.1-201ENST00000614396 364 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AL355810.1-201ENST00000614629 552 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AL121895.2-201ENST00000619558 447 ntBASIC3.34□□□□□ -1.87
PTPN4P29074 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.34□□□□□ -1.87
PTPN4P29074 AC010733.2-201ENST00000589496 5702 ntBASIC3.34□□□□□ -1.88
PTPN4P29074 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PTPN4P29074 AC110774.1-201ENST00000623567 2018 ntBASIC3.34□□□□□ -1.88
PTPN4P29074 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
PTPN4P29074 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PTPN4P29074 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.33□□□□□ -1.88
PTPN4P29074 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.33□□□□□ -1.88
PTPN4P29074 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.33□□□□□ -1.88
PTPN4P29074 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms