Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 ELOCP13-201ENST00000443934 329 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AL358794.1-201ENST00000445689 381 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 EXOSC3P1-201ENST00000448649 500 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 RPL12P22-201ENST00000519073 490 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC245166.1-201ENST00000521012 253 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 SYF2P1-201ENST00000550658 413 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AL389895.1-201ENST00000554127 252 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 MTCYBP27-201ENST00000555160 670 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 SULT1C2P1-202ENST00000562418 459 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC074050.1-201ENST00000563247 211 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC091946.2-201ENST00000606105 291 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC008083.4-201ENST00000615076 444 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC007318.2-201ENST00000620999 243 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 MTND2P41-201ENST00000637599 773 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC093908.1-201ENST00000623125 8092 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 RNA5SP258-201ENST00000362750 119 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 SNORD82-201ENST00000365530 70 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 SNORA51.6-201ENST00000384151 125 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 SNORA40.2-201ENST00000390847 128 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC016769.3-201ENST00000396562 315 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC013410.2-201ENST00000422627 201 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC006548.1-201ENST00000427470 102 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 MTCO1P48-201ENST00000448024 1096 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 RPL21P104-201ENST00000464143 478 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 OR4G11P-201ENST00000492842 939 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC093278.1-201ENST00000494700 600 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 HMGB1P22-201ENST00000505315 124 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 RNU6-1073P-201ENST00000517182 106 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC009812.2-201ENST00000517657 457 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AP001189.2-201ENST00000527320 189 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 MTCYBP23-201ENST00000558717 1102 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 GTF2IP8-201ENST00000560687 584 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC103881.1-201ENST00000603476 538 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC099778.2-201ENST00000610904 211 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 CYCSP41-201ENST00000616920 296 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 CR381572.1-201ENST00000625098 102 ntBASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS54Q9P1Q0 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 OR5BR1P-201ENST00000524992 1330 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC092326.2-201ENST00000624772 1561 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 RN7SKP220-201ENST00000410611 288 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 RNU2-42P-201ENST00000410697 113 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 VN1R51P-201ENST00000411675 945 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 RPL7P8-201ENST00000411964 730 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AL161449.1-201ENST00000414531 1199 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 VDAC1P3-201ENST00000434069 851 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 RPL5P24-201ENST00000463742 885 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 VN1R17P-201ENST00000472048 1090 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC117440.1-201ENST00000474107 571 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 KCTD9P5-201ENST00000504141 1170 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC093767.1-201ENST00000504523 156 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC087808.1-201ENST00000520501 361 ntBASIC3.48□□□□□ -1.85
VPS54Q9P1Q0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms