Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
USP38Q8NB14 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.28□□□□□ -1.72
USP38Q8NB14 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP38Q8NB14 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP38Q8NB14 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.28□□□□□ -1.72
USP38Q8NB14 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP38Q8NB14 AL031985.3-201ENST00000565390 2449 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP38Q8NB14 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP38Q8NB14 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP38Q8NB14 IPO8P1-201ENST00000455509 3109 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
USP38Q8NB14 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
USP38Q8NB14 RPL23AP57-201ENST00000332361 466 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 RNU6-723P-201ENST00000383973 107 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 MIR320C1-201ENST00000408566 88 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 TPMTP2-201ENST00000414372 726 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 AC097713.2-201ENST00000430199 356 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 ARPC3P5-201ENST00000448802 534 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 PAXBP1P1-201ENST00000449315 447 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.27□□□□□ -1.73
USP38Q8NB14 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.27□□□□□ -1.73
USP38Q8NB14 AL133162.1-201ENST00000463228 453 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.27□□□□□ -1.73
USP38Q8NB14 AC111000.2-201ENST00000507775 550 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.27□□□□□ -1.73
USP38Q8NB14 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.27□□□□□ -1.73
USP38Q8NB14 RNU6-27P-201ENST00000516146 107 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 SNORA70.14-201ENST00000516205 110 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 HSPA8P13-201ENST00000523715 472 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP38Q8NB14 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.27□□□□□ -1.73
USP38Q8NB14 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.27□□□□□ -1.73
USP38Q8NB14 MIR5187-201ENST00000583479 76 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 AC072039.2-201ENST00000608883 439 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 AC004223.4-201ENST00000612426 332 ntBASIC4.27□□□□□ -1.73
USP38Q8NB14 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.27□□□□□ -1.73
USP38Q8NB14 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.27□□□□□ -1.73
USP38Q8NB14 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
USP38Q8NB14 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP38Q8NB14 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP38Q8NB14 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.26□□□□□ -1.73
USP38Q8NB14 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP38Q8NB14 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP38Q8NB14 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP38Q8NB14 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
USP38Q8NB14 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP38Q8NB14 RNU6-462P-201ENST00000362659 105 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 RNU6-553P-201ENST00000364047 96 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 RNU6-660P-201ENST00000364566 109 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 Y_RNA.302-201ENST00000364997 102 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 RNA5SP167-201ENST00000365461 116 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 SNORD116-2-201ENST00000384274 95 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 SNORD116-6-201ENST00000384711 96 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 MIR199A2-201ENST00000385289 110 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
USP38Q8NB14 RNA5SP56-201ENST00000410277 118 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC009518.2-201ENST00000418056 731 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.26□□□□□ -1.73
USP38Q8NB14 AL512649.1-201ENST00000428997 581 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AL590233.1-201ENST00000430017 456 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AL590103.1-201ENST00000434488 307 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.26□□□□□ -1.73
USP38Q8NB14 AL445567.1-201ENST00000439121 144 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.26□□□□□ -1.73
USP38Q8NB14 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.26□□□□□ -1.73
USP38Q8NB14 BTF3P5-201ENST00000457252 467 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 RPS3AP43-201ENST00000479743 781 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC023424.2-201ENST00000493479 777 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.26□□□□□ -1.73
USP38Q8NB14 HMGN1P11-201ENST00000508668 303 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC010625.1-201ENST00000511296 403 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 NDUFB4P9-201ENST00000511646 388 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.26□□□□□ -1.73
USP38Q8NB14 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.26□□□□□ -1.73
USP38Q8NB14 Vault.1-201ENST00000516474 102 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 SCARNA14-201ENST00000516903 136 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.26□□□□□ -1.73
USP38Q8NB14 OR5B10P-201ENST00000532869 642 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP38Q8NB14 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.26□□□□□ -1.73
USP38Q8NB14 AC007458.1-201ENST00000542812 373 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC091515.1-201ENST00000548110 679 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC109446.2-201ENST00000567872 497 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 IGHV3-29-201ENST00000604817 344 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC010738.1-201ENST00000604970 987 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC092192.1-201ENST00000633154 1018 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC4.26□□□□□ -1.73
USP38Q8NB14 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
USP38Q8NB14 DDX43P2-201ENST00000604753 1354 ntBASIC4.26□□□□□ -1.73
USP38Q8NB14 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.25□□□□□ -1.73
USP38Q8NB14 UBE3AP2-201ENST00000429033 2259 ntBASIC4.25□□□□□ -1.73
USP38Q8NB14 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
USP38Q8NB14 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.25□□□□□ -1.73
USP38Q8NB14 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP38Q8NB14 RNU6-28P-201ENST00000362378 107 ntBASIC4.25□□□□□ -1.73
USP38Q8NB14 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
USP38Q8NB14 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms