Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 FNDC3CP-201ENST00000420795 1155 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 PSMA2P3-201ENST00000429685 675 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AC129850.1-201ENST00000436203 508 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL590399.6-201ENST00000446396 307 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 MTND1P29-201ENST00000448112 647 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 UBE2CP3-201ENST00000502715 450 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AC006499.5-201ENST00000505037 514 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 NDUFAF4P1-201ENST00000559425 519 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 KLKP1-201ENST00000595979 403 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 MTCYBP22-201ENST00000603788 447 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL732372.2-225ENST00000642124 456 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 ZNF833P-201ENST00000424938 1494 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL356473.1-201ENST00000406203 1408 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 MIR124-3-201ENST00000384866 87 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 MIR153-1-201ENST00000384914 90 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 RNU6-328P-201ENST00000390887 106 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 RPL7P60-201ENST00000397636 735 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AL391417.1-201ENST00000404100 426 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 RNU6ATAC-201ENST00000408749 126 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 TPMTP3-201ENST00000411928 735 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 SEPT2P1-201ENST00000419651 180 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC245054.1-201ENST00000420944 258 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC005517.2-201ENST00000424673 553 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC007389.2-201ENST00000434630 306 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 NDUFB1P1-201ENST00000435191 180 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC127537.2-201ENST00000439258 465 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 NOTCH2P1-201ENST00000443481 624 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AL445669.2-201ENST00000454425 421 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC091564.1-201ENST00000464563 479 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 RPL30P9-201ENST00000465586 330 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 PLGLA-201ENST00000465668 449 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 OR2A20P-203ENST00000498397 1268 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 Vault.1-201ENST00000516474 102 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AF131215.7-201ENST00000602443 707 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC135507.1-201ENST00000607214 561 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC073968.1-201ENST00000618594 637 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC004009.2-201ENST00000623016 728 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AL732618.1-201ENST00000623251 301 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC091931.1-201ENST00000623488 728 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 AC090337.1-201ENST00000579651 2074 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.28□□□□□ -1.72
SYNE3Q6ZMZ3 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
SYNE3Q6ZMZ3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.73
SYNE3Q6ZMZ3 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SYNE3Q6ZMZ3 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SYNE3Q6ZMZ3 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.27□□□□□ -1.73
SYNE3Q6ZMZ3 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SYNE3Q6ZMZ3 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms