Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 RNU5F-6P-201ENST00000362979 116 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 RNU6-348P-201ENST00000384386 107 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AL023807.1-201ENST00000407932 359 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AL133384.1-201ENST00000412744 351 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 HMGB1P11-201ENST00000413899 637 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 RPL17P36-201ENST00000420302 549 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AL500522.2-201ENST00000448562 343 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 MTCO3P2-201ENST00000457365 171 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 OR9M1P-201ENST00000459641 921 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC091564.1-201ENST00000464563 479 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC010342.1-201ENST00000514047 877 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 FABP5P5-201ENST00000515537 406 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 RNU6-1178P-201ENST00000516674 107 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 IGLVIV-53-201ENST00000520107 367 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 OR4R3P-201ENST00000525084 838 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC107016.1-201ENST00000550463 337 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 ZNF519P3-201ENST00000557158 1032 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC136619.2-201ENST00000563361 631 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 SNORD39.3-201ENST00000584451 71 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AP000403.1-201ENST00000603349 851 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AC112187.2-201ENST00000604345 283 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 HMGB1P50-201ENST00000605814 607 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 AL513477.2-201ENST00000607858 568 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 U73479.1-201ENST00000618062 168 ntBASIC4.66□□□□□ -1.66
VPS53Q5VIR6 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS53Q5VIR6 MTND4P16-201ENST00000466108 1367 ntBASIC4.65□□□□□ -1.66
VPS53Q5VIR6 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS53Q5VIR6 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
VPS53Q5VIR6 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
VPS53Q5VIR6 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
VPS53Q5VIR6 PNPT1P2-201ENST00000456768 2050 ntBASIC4.65□□□□□ -1.66
VPS53Q5VIR6 Y_RNA.126-201ENST00000363382 111 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 RNU6-657P-201ENST00000383904 107 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 SNORA57.1-201ENST00000391227 145 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 FNDC3CP-201ENST00000420795 1155 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC091862.1-201ENST00000438016 1100 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 RPL23AP16-201ENST00000441715 421 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 EEF1E1P1-201ENST00000446998 430 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC239367.2-201ENST00000447309 705 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 TRBV26-201ENST00000456572 344 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC114981.1-201ENST00000503897 678 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 BTF3L4P4-201ENST00000506381 449 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC005798.1-201ENST00000513715 387 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 ZNF705CP-201ENST00000530515 889 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC068587.4-201ENST00000533893 186 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC016957.1-201ENST00000534895 309 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 MIR548AB-201ENST00000584917 84 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 MIR486-1-201ENST00000612171 68 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC078899.5-201ENST00000612475 178 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 AC079684.1-201ENST00000621405 437 ntBASIC4.65□□□□□ -1.67
VPS53Q5VIR6 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS53Q5VIR6 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS53Q5VIR6 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms