Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AL359893.1-201ENST00000447628 1580 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 RNU6-1251P-201ENST00000364502 107 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC073464.3-201ENST00000422564 712 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC108667.1-201ENST00000428618 249 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC092451.1-201ENST00000480211 153 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 MTATP6P22-201ENST00000507369 598 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 SMARCE1P4-201ENST00000523647 241 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 SNRPGP18-201ENST00000553000 214 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC090695.1-201ENST00000561269 1222 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AC026464.5-201ENST00000562497 722 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 AL645944.1-201ENST00000603857 493 ntBASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
CCDC88AQ3V6T2 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 RNA5SP344-201ENST00000411081 104 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 MTND4P11-201ENST00000417020 1058 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 AC009965.2-201ENST00000425328 970 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 AC011816.1-201ENST00000441346 546 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 AC009961.3-201ENST00000449832 765 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 AC010198.2-201ENST00000550612 259 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 API5P2-201ENST00000397055 1498 ntBASIC2.76□□□□□ -1.97
CCDC88AQ3V6T2 RNF6P1-201ENST00000444889 1784 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AL356292.1-201ENST00000283110 373 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 RNA5SP295-201ENST00000362655 121 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 HMGB1P11-201ENST00000413899 637 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 MTCYBP31-201ENST00000438855 1122 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 HMGB1P48-201ENST00000446155 598 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC108729.3-201ENST00000513484 108 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC105137.2-201ENST00000569073 466 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 VN1R84P-201ENST00000593697 235 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC007687.1-201ENST00000602704 304 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC011472.4-201ENST00000615848 491 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 U3.15-201ENST00000365398 212 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 RNA5SP167-201ENST00000365461 116 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC093716.1-201ENST00000435923 377 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 MTCYBP12-201ENST00000440559 1134 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC007677.1-201ENST00000445757 515 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 RNU7-27P-201ENST00000459281 62 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 SNORD13-201ENST00000459299 104 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC006483.1-201ENST00000487308 313 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AP004242.1-201ENST00000533701 349 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 AL590410.1-201ENST00000617925 333 ntBASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC88AQ3V6T2 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 SAR1AP2-201ENST00000392696 594 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 HMGB1P13-201ENST00000406019 642 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 AC073310.1-201ENST00000423226 1033 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 SNRPGP3-201ENST00000469405 227 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 RPL23AP70-201ENST00000483361 460 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 ATG10-AS1-201ENST00000504846 648 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 SNORD116-30-201ENST00000516468 85 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 NF1P5-201ENST00000588287 448 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 AC103710.1-201ENST00000610003 901 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 SNORA50A-202ENST00000629536 136 ntBASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC88AQ3V6T2 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AL512646.1-201ENST00000269395 1077 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 SNORA31-201ENST00000362607 130 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 U8.8-201ENST00000365399 135 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AL591416.1-201ENST00000404015 867 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC048351.1-201ENST00000420064 602 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 TRIAP1P1-201ENST00000427062 225 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC009414.1-201ENST00000427200 443 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 UBE2V2P1-201ENST00000434717 398 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms