Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL353662.3-201ENST00000625131 237 ntBASIC5.34□□□□□ -1.55
LIG3P49916 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.34□□□□□ -1.55
LIG3P49916 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
LIG3P49916 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIG3P49916 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.34□□□□□ -1.55
LIG3P49916 MTND5P3-201ENST00000438536 1800 ntBASIC5.34□□□□□ -1.55
LIG3P49916 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
LIG3P49916 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
LIG3P49916 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
LIG3P49916 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIG3P49916 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIG3P49916 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIG3P49916 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIG3P49916 LINC01109-201ENST00000603837 3081 ntBASIC5.33□□□□□ -1.56
LIG3P49916 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIG3P49916 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.33□□□□□ -1.56
LIG3P49916 AC109780.1-201ENST00000451768 1344 ntBASIC5.33□□□□□ -1.56
LIG3P49916 RNU1-43P-201ENST00000365052 165 ntBASIC5.33□□□□□ -1.56
LIG3P49916 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
LIG3P49916 Y_RNA.414-201ENST00000384011 101 ntBASIC5.33□□□□□ -1.56
LIG3P49916 Y_RNA.493-201ENST00000384422 102 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AL359634.1-202ENST00000404721 284 ntBASIC5.33□□□□□ -1.56
LIG3P49916 RN7SKP159-201ENST00000410657 292 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 AL590609.2-201ENST00000421430 368 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.33□□□□□ -1.56
LIG3P49916 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 IGHV5-78-201ENST00000450948 295 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AC104634.1-201ENST00000452720 462 ntBASIC5.33□□□□□ -1.56
LIG3P49916 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 AC022795.1-201ENST00000473808 480 ntBASIC5.33□□□□□ -1.56
LIG3P49916 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.33□□□□□ -1.56
LIG3P49916 HIGD1AP3-201ENST00000515857 278 ntBASIC5.33□□□□□ -1.56
LIG3P49916 RNU6-1045P-201ENST00000516321 107 ntBASIC5.33□□□□□ -1.56
LIG3P49916 RNU6-1092P-201ENST00000516955 87 ntBASIC5.33□□□□□ -1.56
LIG3P49916 DEFB108D-201ENST00000527787 222 ntBASIC5.33□□□□□ -1.56
LIG3P49916 RN7SL52P-201ENST00000584271 284 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AC012443.1-201ENST00000605605 231 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.33□□□□□ -1.56
LIG3P49916 AC244107.2-201ENST00000611773 76 ntBASIC5.33□□□□□ -1.56
LIG3P49916 uc_338.15-201ENST00000615470 191 ntBASIC5.33□□□□□ -1.56
LIG3P49916 AC134503.1-201ENST00000633048 54 ntBASIC5.33□□□□□ -1.56
LIG3P49916 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
LIG3P49916 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG3P49916 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
LIG3P49916 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
LIG3P49916 RNU6-989P-201ENST00000362756 107 ntBASIC5.32□□□□□ -1.56
LIG3P49916 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 AC019155.1-201ENST00000382242 574 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RNU6-754P-201ENST00000391166 107 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AL592114.1-201ENST00000403842 483 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RPS4XP9-201ENST00000405151 780 ntBASIC5.32□□□□□ -1.56
LIG3P49916 DUTP5-201ENST00000406790 469 ntBASIC5.32□□□□□ -1.56
LIG3P49916 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG3P49916 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.32□□□□□ -1.56
LIG3P49916 RPL7L1P10-201ENST00000427790 463 ntBASIC5.32□□□□□ -1.56
LIG3P49916 LYPLA1P1-201ENST00000434514 622 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AC234775.1-201ENST00000454247 670 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RNU6-1208P-201ENST00000459588 107 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RPS27AP1-201ENST00000475545 471 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RPS4XP20-201ENST00000505751 772 ntBASIC5.32□□□□□ -1.56
LIG3P49916 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG3P49916 RNU6-559P-201ENST00000516151 98 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RNU6-327P-201ENST00000516270 127 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG3P49916 MYL12AP1-201ENST00000518490 515 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG3P49916 AP003385.6-201ENST00000531603 374 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG3P49916 AC007448.1-201ENST00000582714 234 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.32□□□□□ -1.56
LIG3P49916 AP001330.4-201ENST00000604350 154 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AP001836.1-201ENST00000604675 523 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AL592436.1-201ENST00000605135 558 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AC092807.2-201ENST00000609367 243 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AL390240.1-201ENST00000612950 384 ntBASIC5.32□□□□□ -1.56
LIG3P49916 AC055839.1-201ENST00000634467 498 ntBASIC5.32□□□□□ -1.56
LIG3P49916 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.32□□□□□ -1.56
LIG3P49916 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
LIG3P49916 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG3P49916 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.32□□□□□ -1.56
LIG3P49916 AL022322.2-201ENST00000624072 20397 ntBASIC5.32□□□□□ -1.56
LIG3P49916 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG3P49916 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG3P49916 SMG1P6-201ENST00000532337 2930 ntBASIC5.31□□□□□ -1.56
LIG3P49916 GABPAP-201ENST00000419271 1356 ntBASIC5.31□□□□□ -1.56
LIG3P49916 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms