Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC025031.4-201ENST00000621248 3271 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AP001642.1-201ENST00000624727 2117 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AL159972.1-201ENST00000625150 448 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 CASC19-280ENST00000642102 1351 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 ZNF734P-201ENST00000419494 1534 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC138915.3-201ENST00000562908 1389 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 RNU6-263P-201ENST00000363811 107 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 U3.15-201ENST00000365398 212 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 MT-TL1-201ENST00000386347 75 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 U3.20-201ENST00000390909 217 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 RNU6-876P-201ENST00000391295 104 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 AL139413.1-201ENST00000421309 217 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 OR2AH1P-201ENST00000425717 928 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC008065.1-201ENST00000428525 348 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 EZH2P1-201ENST00000431167 291 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 RPS6P12-201ENST00000432491 726 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD3P31249 FTH1P1-201ENST00000437933 532 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 RPL7P54-201ENST00000438336 674 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 SNRPEP8-201ENST00000442866 260 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 RPL23AP20-201ENST00000447965 421 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AL162591.2-201ENST00000449634 317 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 NUTF2P7-201ENST00000453086 375 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC053481.1-201ENST00000467217 306 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC010618.1-201ENST00000469924 477 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD3P31249 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC021146.1-201ENST00000511202 716 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 RNA5SP337-201ENST00000517007 109 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC109635.3-201ENST00000529536 185 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC005730.3-201ENST00000583067 366 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD3P31249 AC068790.3-201ENST00000602988 553 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC025449.1-201ENST00000603896 529 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC007363.1-201ENST00000604736 620 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD3P31249 AL020991.1-201ENST00000612314 373 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC011944.2-201ENST00000624440 683 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD3P31249 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 AL731566.1-201ENST00000620490 1937 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 AC011460.1-201ENST00000636268 1834 ntBASIC3.56□□□□□ -1.84
HOXD3P31249 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD3P31249 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD3P31249 LINC00622-201ENST00000562811 1570 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 NMD3P1-201ENST00000439704 1488 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD3P31249 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.55□□□□□ -1.84
HOXD3P31249 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXD3P31249 RNU6-339P-201ENST00000384310 107 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 Y_RNA.493-201ENST00000384422 102 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 MIR124-3-201ENST00000384866 87 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 FGF7P8-201ENST00000402994 292 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 RN7SKP27-201ENST00000410684 333 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD3P31249 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD3P31249 ELOCP4-201ENST00000420090 333 ntBASIC3.55□□□□□ -1.84
HOXD3P31249 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD3P31249 RPL34P6-201ENST00000432390 345 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms