Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC012498.1-201ENST00000424037 437 ntBASIC2.7□□□□□ -1.98
USF1P22415 BX890604.2-201ENST00000427883 474 ntBASIC2.7□□□□□ -1.98
USF1P22415 AL512637.2-201ENST00000431287 1256 ntBASIC2.7□□□□□ -1.98
USF1P22415 OR2B8P-201ENST00000432841 938 ntBASIC2.7□□□□□ -1.98
USF1P22415 RPL23AP22-201ENST00000437556 453 ntBASIC2.7□□□□□ -1.98
USF1P22415 ISCA1P2-201ENST00000438679 421 ntBASIC2.7□□□□□ -1.98
USF1P22415 Z99127.3-201ENST00000448158 395 ntBASIC2.7□□□□□ -1.98
USF1P22415 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.7□□□□□ -1.98
USF1P22415 RPS17P11-201ENST00000474297 293 ntBASIC2.7□□□□□ -1.98
USF1P22415 HMGN2P13-201ENST00000476476 274 ntBASIC2.7□□□□□ -1.98
USF1P22415 GAPDHP39-201ENST00000481866 979 ntBASIC2.7□□□□□ -1.98
USF1P22415 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.7□□□□□ -1.98
USF1P22415 AC097462.2-201ENST00000504623 481 ntBASIC2.7□□□□□ -1.98
USF1P22415 MLLT10P2-201ENST00000506434 249 ntBASIC2.7□□□□□ -1.98
USF1P22415 ARL4AP2-201ENST00000507378 601 ntBASIC2.7□□□□□ -1.98
USF1P22415 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.7□□□□□ -1.98
USF1P22415 AC239860.2-201ENST00000525886 270 ntBASIC2.7□□□□□ -1.98
USF1P22415 AP001317.1-201ENST00000531194 960 ntBASIC2.7□□□□□ -1.98
USF1P22415 SNRPGP16-201ENST00000533275 226 ntBASIC2.7□□□□□ -1.98
USF1P22415 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.7□□□□□ -1.98
USF1P22415 AL391156.1-201ENST00000554965 554 ntBASIC2.7□□□□□ -1.98
USF1P22415 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.7□□□□□ -1.98
USF1P22415 MIR4298-201ENST00000584380 73 ntBASIC2.7□□□□□ -1.98
USF1P22415 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.7□□□□□ -1.98
USF1P22415 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.7□□□□□ -1.98
USF1P22415 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.7□□□□□ -1.98
USF1P22415 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.7□□□□□ -1.98
USF1P22415 AC093732.2-201ENST00000607950 274 ntBASIC2.7□□□□□ -1.98
USF1P22415 uc_338.1-201ENST00000612113 180 ntBASIC2.7□□□□□ -1.98
USF1P22415 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.7□□□□□ -1.98
USF1P22415 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
USF1P22415 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
USF1P22415 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.7□□□□□ -1.98
USF1P22415 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.7□□□□□ -1.98
USF1P22415 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
USF1P22415 GDI2P1-201ENST00000429312 1336 ntBASIC2.69□□□□□ -1.98
USF1P22415 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 AC009487.2-201ENST00000420969 6821 ntBASIC2.69□□□□□ -1.98
USF1P22415 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.69□□□□□ -1.98
USF1P22415 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 OR5H2-201ENST00000355273 945 ntBASIC2.69□□□□□ -1.98
USF1P22415 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
USF1P22415 SNORD56.3-201ENST00000363507 71 ntBASIC2.69□□□□□ -1.98
USF1P22415 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 AL133264.1-201ENST00000407157 562 ntBASIC2.69□□□□□ -1.98
USF1P22415 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.69□□□□□ -1.98
USF1P22415 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 RPL35AP12-201ENST00000425362 338 ntBASIC2.69□□□□□ -1.98
USF1P22415 RPL21P40-201ENST00000428586 483 ntBASIC2.69□□□□□ -1.98
USF1P22415 SNRPEP4-201ENST00000435815 279 ntBASIC2.69□□□□□ -1.98
USF1P22415 CST9LP2-201ENST00000437612 320 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.69□□□□□ -1.98
USF1P22415 HMGB3P11-201ENST00000440127 604 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.69□□□□□ -1.98
USF1P22415 MTCO1P48-201ENST00000448024 1096 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.69□□□□□ -1.98
USF1P22415 RPL23AP31-201ENST00000456160 467 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.69□□□□□ -1.98
USF1P22415 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 UBE2DNL-203ENST00000474922 222 ntBASIC2.69□□□□□ -1.98
USF1P22415 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.69□□□□□ -1.98
USF1P22415 KLHL2P1-201ENST00000508691 521 ntBASIC2.69□□□□□ -1.98
USF1P22415 RNA5SP385-201ENST00000515947 110 ntBASIC2.69□□□□□ -1.98
USF1P22415 AP003168.1-201ENST00000530091 307 ntBASIC2.69□□□□□ -1.98
USF1P22415 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
USF1P22415 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.69□□□□□ -1.98
USF1P22415 H3F3AP1-201ENST00000559984 334 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 AP001542.2-201ENST00000593141 364 ntBASIC2.69□□□□□ -1.98
USF1P22415 BDH2P1-201ENST00000602288 736 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC012669.1-201ENST00000603209 283 ntBASIC2.69□□□□□ -1.98
USF1P22415 AP001330.4-201ENST00000604350 154 ntBASIC2.69□□□□□ -1.98
USF1P22415 MIR7106-201ENST00000612419 65 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC008083.4-201ENST00000615076 444 ntBASIC2.69□□□□□ -1.98
USF1P22415 AC026634.1-201ENST00000634369 198 ntBASIC2.69□□□□□ -1.98
USF1P22415 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
USF1P22415 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.69□□□□□ -1.98
USF1P22415 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
USF1P22415 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
USF1P22415 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.68□□□□□ -1.98
USF1P22415 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
USF1P22415 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USF1P22415 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
USF1P22415 OR1S2-201ENST00000302592 978 ntBASIC2.68□□□□□ -1.98
USF1P22415 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
USF1P22415 MIR148B-201ENST00000362252 99 ntBASIC2.68□□□□□ -1.98
USF1P22415 U3.11-201ENST00000364476 212 ntBASIC2.68□□□□□ -1.98
USF1P22415 AL136133.1-201ENST00000413694 376 ntBASIC2.68□□□□□ -1.98
USF1P22415 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.68□□□□□ -1.98
USF1P22415 HSPE1P1-201ENST00000421494 318 ntBASIC2.68□□□□□ -1.98
USF1P22415 UBE2D3P2-201ENST00000424409 445 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.68□□□□□ -1.98
USF1P22415 AC233728.2-201ENST00000425348 757 ntBASIC2.68□□□□□ -1.98
USF1P22415 FO393414.1-201ENST00000428697 1184 ntBASIC2.68□□□□□ -1.98
USF1P22415 MTCYBP15-201ENST00000433123 1127 ntBASIC2.68□□□□□ -1.98
USF1P22415 MTND4LP10-201ENST00000435146 291 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC009969.1-201ENST00000438726 172 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms