Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC017007.3-201ENST00000479865 435 ntBASIC2.75□□□□□ -1.97
APOEP02649 GAPDHP39-201ENST00000481866 979 ntBASIC2.75□□□□□ -1.97
APOEP02649 RN7SL432P-201ENST00000484057 298 ntBASIC2.75□□□□□ -1.97
APOEP02649 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.75□□□□□ -1.97
APOEP02649 RNU6-889P-201ENST00000517189 103 ntBASIC2.75□□□□□ -1.97
APOEP02649 AC090136.1-201ENST00000520009 240 ntBASIC2.75□□□□□ -1.97
APOEP02649 AP003102.1-201ENST00000525638 661 ntBASIC2.75□□□□□ -1.97
APOEP02649 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.75□□□□□ -1.97
APOEP02649 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.75□□□□□ -1.97
APOEP02649 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.75□□□□□ -1.97
APOEP02649 AL669831.4-202ENST00000590817 238 ntBASIC2.75□□□□□ -1.97
APOEP02649 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.75□□□□□ -1.97
APOEP02649 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.75□□□□□ -1.97
APOEP02649 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
APOEP02649 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
APOEP02649 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
APOEP02649 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
APOEP02649 AC138915.1-201ENST00000565427 1685 ntBASIC2.75□□□□□ -1.97
APOEP02649 AP000526.1-201ENST00000603308 1388 ntBASIC2.74□□□□□ -1.97
APOEP02649 AC009501.3-201ENST00000605001 1352 ntBASIC2.74□□□□□ -1.97
APOEP02649 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
APOEP02649 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
APOEP02649 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
APOEP02649 AC109315.1-201ENST00000584143 1347 ntBASIC2.74□□□□□ -1.97
APOEP02649 AC104446.1-201ENST00000613728 1321 ntBASIC2.74□□□□□ -1.97
APOEP02649 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
APOEP02649 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
APOEP02649 Y_RNA.111-201ENST00000363248 100 ntBASIC2.74□□□□□ -1.97
APOEP02649 RNA5SP393-201ENST00000363423 117 ntBASIC2.74□□□□□ -1.97
APOEP02649 SNORA14A-201ENST00000364773 135 ntBASIC2.74□□□□□ -1.97
APOEP02649 Y_RNA.510-201ENST00000384511 114 ntBASIC2.74□□□□□ -1.97
APOEP02649 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
APOEP02649 ARF4P3-201ENST00000397387 509 ntBASIC2.74□□□□□ -1.97
APOEP02649 AL356057.3-201ENST00000402607 340 ntBASIC2.74□□□□□ -1.97
APOEP02649 Z86062.1-201ENST00000406773 777 ntBASIC2.74□□□□□ -1.97
APOEP02649 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.74□□□□□ -1.97
APOEP02649 OFD1P18Y-201ENST00000420889 959 ntBASIC2.74□□□□□ -1.97
APOEP02649 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.74□□□□□ -1.97
APOEP02649 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.74□□□□□ -1.97
APOEP02649 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.74□□□□□ -1.97
APOEP02649 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.74□□□□□ -1.97
APOEP02649 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.74□□□□□ -1.97
APOEP02649 AP000852.1-201ENST00000472460 573 ntBASIC2.74□□□□□ -1.97
APOEP02649 AC015908.1-201ENST00000478739 476 ntBASIC2.74□□□□□ -1.97
APOEP02649 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.74□□□□□ -1.97
APOEP02649 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.74□□□□□ -1.97
APOEP02649 AC090543.1-201ENST00000492168 485 ntBASIC2.74□□□□□ -1.97
APOEP02649 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.74□□□□□ -1.97
APOEP02649 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.74□□□□□ -1.97
APOEP02649 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.74□□□□□ -1.97
APOEP02649 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.74□□□□□ -1.97
APOEP02649 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
APOEP02649 DNAJC8P1-201ENST00000554535 372 ntBASIC2.74□□□□□ -1.97
APOEP02649 AP001029.3-201ENST00000588063 596 ntBASIC2.74□□□□□ -1.97
APOEP02649 AL049779.4-201ENST00000604500 156 ntBASIC2.74□□□□□ -1.97
APOEP02649 AC018755.4-201ENST00000619715 454 ntBASIC2.74□□□□□ -1.97
APOEP02649 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.74□□□□□ -1.97
APOEP02649 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
APOEP02649 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.74□□□□□ -1.97
APOEP02649 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.74□□□□□ -1.97
APOEP02649 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
APOEP02649 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
APOEP02649 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
APOEP02649 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
APOEP02649 RNU6-1027P-201ENST00000383998 107 ntBASIC2.73□□□□□ -1.97
APOEP02649 RNU1-138P-201ENST00000384093 164 ntBASIC2.73□□□□□ -1.97
APOEP02649 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.73□□□□□ -1.97
APOEP02649 SFR1P1-201ENST00000403720 688 ntBASIC2.73□□□□□ -1.97
APOEP02649 DHFRP5-201ENST00000406944 564 ntBASIC2.73□□□□□ -1.97
APOEP02649 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.73□□□□□ -1.97
APOEP02649 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.73□□□□□ -1.97
APOEP02649 AC233982.1-201ENST00000451247 436 ntBASIC2.73□□□□□ -1.97
APOEP02649 AL109933.2-201ENST00000452651 260 ntBASIC2.73□□□□□ -1.97
APOEP02649 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.73□□□□□ -1.97
APOEP02649 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.73□□□□□ -1.97
APOEP02649 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
APOEP02649 MTCO1P31-201ENST00000506355 492 ntBASIC2.73□□□□□ -1.97
APOEP02649 AC009901.1-201ENST00000506703 541 ntBASIC2.73□□□□□ -1.97
APOEP02649 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.73□□□□□ -1.97
APOEP02649 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.73□□□□□ -1.97
APOEP02649 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
APOEP02649 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.73□□□□□ -1.97
APOEP02649 AC011374.2-201ENST00000607135 526 ntBASIC2.73□□□□□ -1.97
APOEP02649 AC002064.3-201ENST00000623448 346 ntBASIC2.73□□□□□ -1.97
APOEP02649 AC095031.1-201ENST00000623685 672 ntBASIC2.73□□□□□ -1.97
APOEP02649 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
APOEP02649 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
APOEP02649 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
APOEP02649 SNORD62.1-201ENST00000362541 86 ntBASIC2.72□□□□□ -1.97
APOEP02649 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
APOEP02649 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
APOEP02649 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
APOEP02649 AL139039.1-201ENST00000401900 692 ntBASIC2.72□□□□□ -1.97
APOEP02649 RPS20P25-201ENST00000412447 352 ntBASIC2.72□□□□□ -1.97
APOEP02649 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.72□□□□□ -1.97
APOEP02649 AC129850.1-201ENST00000436203 508 ntBASIC2.72□□□□□ -1.97
APOEP02649 RPS29P12-201ENST00000460178 152 ntBASIC2.72□□□□□ -1.97
APOEP02649 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.72□□□□□ -1.97
APOEP02649 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.72□□□□□ -1.97
APOEP02649 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms