Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RN7SKP289-201ENST00000517244 295 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC104986.1-201ENST00000517978 436 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 IGKV2D-23-201ENST00000518179 286 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AADACP1-206ENST00000561502 1193 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 MIR5680-201ENST00000577577 84 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 MIR4637-201ENST00000582405 84 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC069304.2-201ENST00000605154 435 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC090425.2-201ENST00000608818 501 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 RMST_8.1-201ENST00000610287 165 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 AC016597.2-201ENST00000613256 341 ntBASIC3.29□□□□□ -1.88
LHX3Q9UBR4 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LHX3Q9UBR4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 RNU6-1122P-201ENST00000384449 107 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 TAF9BP1-201ENST00000396646 746 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 RNA5SP80-201ENST00000410475 111 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AL356320.2-201ENST00000417263 507 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 BX679664.1-201ENST00000434429 253 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 MTND4LP10-201ENST00000435146 291 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC004854.1-201ENST00000440356 349 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 MTND2P19-201ENST00000449129 1012 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC104978.1-201ENST00000449387 391 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 PTGES3P5-201ENST00000455109 434 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 snoU13.4-201ENST00000458916 104 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC010401.1-201ENST00000463867 348 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 PHBP14-201ENST00000512887 367 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 MTCO2P32-201ENST00000514865 403 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 HSPE1P3-201ENST00000559254 309 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC009101.1-201ENST00000568135 242 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 MIR4644-201ENST00000579929 84 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 RPP40P2-201ENST00000603596 712 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AL365503.1-201ENST00000605247 905 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 YPEL5P2-201ENST00000605553 359 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 RNU4-5P-201ENST00000607255 135 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC022960.3-201ENST00000619794 441 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
LHX3Q9UBR4 AC106754.1-201ENST00000562632 1513 ntBASIC3.28□□□□□ -1.88
LHX3Q9UBR4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.28□□□□□ -1.89
LHX3Q9UBR4 AC007496.3-201ENST00000624987 3443 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 ZNF29P-201ENST00000225587 168 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 RNU4-68P-201ENST00000364314 141 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 SNORD6-201ENST00000365444 73 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 U3.19-201ENST00000390893 196 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 ERHP2-201ENST00000402323 299 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 RNA5SP31-201ENST00000411144 127 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC099677.1-201ENST00000420575 175 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL049610.1-201ENST00000423374 372 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL353705.1-201ENST00000433468 480 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 USP9YP24-201ENST00000434374 697 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 CST9LP2-201ENST00000437612 320 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 USP9YP17-201ENST00000444617 696 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL009048.1-201ENST00000450437 298 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC005410.1-202ENST00000460347 485 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 RN7SL807P-201ENST00000470923 297 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 NIPA2P2-201ENST00000496376 1083 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 TRAV31-201ENST00000502780 342 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC018630.1-201ENST00000541376 925 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 SNORD84-203ENST00000584275 78 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 MAGOH2P-202ENST00000584384 429 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 BNIP3P22-201ENST00000593399 556 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC012669.1-201ENST00000603209 283 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC080013.4-201ENST00000607624 649 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms