Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AL356473.1-201ENST00000406203 1408 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 RNU1-75P-201ENST00000347264 129 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 CYCSP45-201ENST00000402289 315 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 MTATP6P27-201ENST00000416987 621 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 OR1AA1P-201ENST00000419597 916 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AC007742.1-201ENST00000425789 329 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 YME1L1P1-201ENST00000429435 297 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AL445584.1-201ENST00000431451 330 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ELOCP26-201ENST00000436067 329 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AL606517.1-201ENST00000446914 387 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 NECAP1P2-201ENST00000455668 727 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 snoU13.4-201ENST00000458916 104 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 OR9M1P-201ENST00000459641 921 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ST13P14-201ENST00000474095 734 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AC006499.2-201ENST00000513470 337 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 MTCO2P32-201ENST00000514865 403 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 RNY4P37-201ENST00000516225 96 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 RNU6-415P-201ENST00000516252 97 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 SETP7-201ENST00000552169 453 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 TRAV37-201ENST00000553906 342 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 NBEAP1-201ENST00000554452 979 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 VN1R78P-201ENST00000597393 564 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AC131235.4-201ENST00000609288 620 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AL354798.1-201ENST00000622505 329 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 AC231657.1-201ENST00000624313 397 ntBASIC3.3□□□□□ -1.88
DDX28Q9NUL7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.3□□□□□ -1.88
DDX28Q9NUL7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 OR5BR1P-201ENST00000524992 1330 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 SNORA70.4-201ENST00000365509 134 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 SNORD3H-201ENST00000384486 214 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 RNA5SP424-201ENST00000390988 115 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 DHFRP6-201ENST00000401776 268 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC245052.5-201ENST00000416320 649 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 RPL7P30-201ENST00000420888 709 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 MTND2P9-201ENST00000422293 931 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 MTCO2P5-201ENST00000422621 426 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 DUTP6-201ENST00000425573 462 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 MUPP-201ENST00000438111 566 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 SETD6P1-201ENST00000444575 317 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC091179.1-201ENST00000461606 579 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 RPL7P49-201ENST00000471402 708 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 RPL7P5-201ENST00000471472 736 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC092185.1-201ENST00000491371 97 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC096751.1-202ENST00000502691 1067 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 OR5AK1P-201ENST00000524837 922 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC024224.1-201ENST00000538284 609 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 CYCSP30-201ENST00000546447 172 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC006960.3-201ENST00000561845 705 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC009712.1-201ENST00000564938 316 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX28Q9NUL7 KLKP1-201ENST00000595979 403 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AC097478.2-201ENST00000610572 514 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AL390240.1-201ENST00000612950 384 ntBASIC3.29□□□□□ -1.88
DDX28Q9NUL7 AL050303.3-201ENST00000613704 284 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms