Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL159169.3-201ENST00000608871 561 ntBASIC3.83□□□□□ -1.8
PCDH9Q9HC56 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDH9Q9HC56 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 MTCO1P23-201ENST00000415223 1526 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AP004289.2-201ENST00000444413 1457 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 RNU6-462P-201ENST00000362659 105 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 RNU6-289P-201ENST00000364093 107 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 MTCYBP36-201ENST00000404146 440 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 KCTD10P1-201ENST00000434203 625 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AL138799.3-201ENST00000438968 350 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 TRIM60P18-201ENST00000441518 828 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 COX6CP12-201ENST00000446748 202 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC104073.1-201ENST00000451988 151 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 SNRPGP9-201ENST00000456025 225 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 CEACAMP4-201ENST00000457676 421 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 RNU7-136P-201ENST00000458819 69 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC026410.2-201ENST00000460281 156 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC116337.2-201ENST00000477662 156 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 RPL21P103-201ENST00000479921 488 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC092451.1-201ENST00000480211 153 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC016065.2-201ENST00000514530 444 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC087276.1-201ENST00000529659 480 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 OR5AP1P-201ENST00000529730 940 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 OR4A45P-201ENST00000529954 901 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC005951.1-201ENST00000576706 485 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC087499.8-201ENST00000578406 226 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC006270.2-201ENST00000578523 652 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC244505.7-201ENST00000599675 272 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC064872.1-201ENST00000604823 1072 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC012531.5-201ENST00000611375 151 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC098679.4-201ENST00000624241 654 ntBASIC3.82□□□□□ -1.8
PCDH9Q9HC56 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
PCDH9Q9HC56 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 OR4G11P-202ENST00000642116 1414 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 RNU6-501P-201ENST00000364072 100 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 SNORD6-201ENST00000365444 73 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 Y_RNA.553-201ENST00000384670 102 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 SOD2P1-201ENST00000396543 562 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 RPL32P23-201ENST00000397237 405 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 MIR320C1-201ENST00000408566 88 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 RN7SKP156-201ENST00000410308 342 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 AL049610.1-201ENST00000423374 372 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 CYCSP46-201ENST00000423569 204 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 AL591419.1-201ENST00000427423 339 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.81□□□□□ -1.8
PCDH9Q9HC56 LSM1P1-201ENST00000438629 273 ntBASIC3.81□□□□□ -1.8
PCDH9Q9HC56 MTCO1P19-201ENST00000443487 500 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms