Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AF213884.2-201ENST00000510417 903 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-1220P-201ENST00000517126 108 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC090572.1-201ENST00000519251 160 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AP001893.2-201ENST00000526949 202 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC123904.3-201ENST00000547218 814 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC128657.1-201ENST00000549459 145 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC105224.1-201ENST00000587055 421 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC119501.1-201ENST00000603646 475 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AL136363.1-201ENST00000605349 337 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC024941.1-201ENST00000612250 334 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC244100.1-202ENST00000621554 382 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 CU639417.4-201ENST00000623928 207 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AL157786.1-207ENST00000627771 695 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC105074.1-201ENST00000623380 3095 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 CR848007.1-201ENST00000442354 1699 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC099654.2-201ENST00000433031 1980 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-1097P-201ENST00000363586 107 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-1284P-201ENST00000363701 100 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-76P-201ENST00000384060 104 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-456P-201ENST00000384493 107 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RPL7L1P9-201ENST00000431298 745 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 CFL1P1-202ENST00000432948 411 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AF228730.2-201ENST00000438784 848 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC079781.2-201ENST00000446424 169 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 HMGN1P36-201ENST00000446623 298 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 snoU13.4-201ENST00000458916 104 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RPL38P1-201ENST00000460914 211 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RPS27AP1-201ENST00000475545 471 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 PPIAP15-201ENST00000479662 484 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 SNORA70.14-201ENST00000516205 110 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU7-51P-201ENST00000516560 62 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-410P-201ENST00000517006 107 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-1073P-201ENST00000517182 106 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 ERHP1-201ENST00000523006 310 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 FAM60DP-201ENST00000524174 632 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 RPL21P12-201ENST00000559810 515 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AF038458.1-201ENST00000588406 262 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC006116.10-201ENST00000591836 581 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AL445222.1-201ENST00000607259 628 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC079395.2-201ENST00000610982 737 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 SNHG22-203ENST00000617833 660 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 FRG1KP-201ENST00000623592 341 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 MIR1910-201ENST00000636955 80 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 AC139769.1-204ENST00000472297 1931 ntBASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC28AQ8IWP9 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 OR4K15-201ENST00000305051 1216 ntBASIC3.92□□□□□ -1.78
CCDC28AQ8IWP9 XIAPP3-201ENST00000312918 795 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms