Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU5F-7P-201ENST00000363696 115 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AL133412.1-201ENST00000380194 2992 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 Z97055.1-201ENST00000419730 712 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AF228730.2-201ENST00000438784 848 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 SNRPFP4-201ENST00000456366 242 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC097493.1-201ENST00000463958 372 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 PPIAP15-201ENST00000479662 484 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 RPL37P25-201ENST00000507308 276 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC109464.2-201ENST00000510242 943 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 TMEM248P1-201ENST00000510579 951 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC006499.2-201ENST00000513470 337 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 SCARNA14-201ENST00000516903 136 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AP003392.2-201ENST00000527269 208 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AP000790.1-201ENST00000528891 737 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 OR4A12P-201ENST00000530847 918 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC092470.1-201ENST00000546187 132 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC090502.2-201ENST00000549267 280 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC005771.1-201ENST00000585581 349 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 OR4G1P-201ENST00000588632 938 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC090186.1-201ENST00000605991 572 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC243773.3-201ENST00000613270 256 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AL591424.2-201ENST00000617023 128 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 TEX21P-201ENST00000447107 1476 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 OR4A15-201ENST00000314706 1035 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 RPS27AP14-201ENST00000422868 454 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 SDCBPP2-201ENST00000424643 885 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 ZYG11AP1-201ENST00000430329 837 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC092427.1-201ENST00000439177 601 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 MTCO1P48-201ENST00000448024 1096 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 NPM1P49-201ENST00000448027 714 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC010301.1-201ENST00000473936 355 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AP000797.1-201ENST00000478870 387 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 OR4G11P-201ENST00000492842 939 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 MTND4LP26-201ENST00000518144 282 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC087481.2-201ENST00000565492 330 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC091489.2-201ENST00000566263 604 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC022916.3-201ENST00000592961 742 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC138749.5-201ENST00000611461 208 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AL589743.7-201ENST00000612637 233 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AC138932.5-201ENST00000617759 563 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 FP236240.3-201ENST00000623061 327 ntBASIC4.67□□□□□ -1.66
VPS53Q5VIR6 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS53Q5VIR6 AP002001.2-201ENST00000529025 1469 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms