Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Z94722.1-201ENST00000604328 474 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC092354.2-201ENST00000607786 514 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC040168.1-201ENST00000623594 991 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC091925.2-201ENST00000625059 256 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC008013.2-202ENST00000637965 364 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 ZNF833P-201ENST00000424938 1494 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 RNA5SP322-201ENST00000363617 119 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 RNU6-777P-201ENST00000364265 104 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 RNU1-89P-201ENST00000384592 164 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 MIR320C1-201ENST00000408566 88 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 SYF2P2-201ENST00000417620 583 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AIMP1P1-201ENST00000418670 937 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 MED14P1-201ENST00000430517 648 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 RPL23AP46-201ENST00000438548 490 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 RPS27AP8-201ENST00000452665 445 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 RPL30P9-201ENST00000465586 330 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC021678.1-201ENST00000505195 936 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 MTND5P4-201ENST00000514978 288 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 PCMTD1P2-201ENST00000565017 355 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC090615.1-201ENST00000577519 154 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC110741.2-201ENST00000605278 268 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC092354.1-201ENST00000606057 376 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC116312.1-201ENST00000606841 314 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC008443.7-201ENST00000622195 246 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 FP236240.3-201ENST00000623061 327 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC091931.1-201ENST00000623488 728 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC007494.3-201ENST00000624660 743 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.88□□□□□ -1.79
COL28A1Q2UY09 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL28A1Q2UY09 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 CR383658.2-201ENST00000547576 1525 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL161781.1-201ENST00000354277 403 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 MIR128-1-201ENST00000384921 82 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC007066.1-201ENST00000392902 381 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 HMGB1P11-201ENST00000413899 637 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC127526.1-201ENST00000417526 366 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 HSPD1P21-201ENST00000436541 245 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 RSU1P2-202ENST00000437884 485 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL117351.1-201ENST00000438864 766 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 MTND2P4-201ENST00000445034 1004 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 NANOGP10-201ENST00000453325 895 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 HMGB1P15-201ENST00000453854 435 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL122001.1-201ENST00000457027 370 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 RPS29P19-201ENST00000479709 171 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC106872.2-201ENST00000494303 480 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 RN7SL323P-201ENST00000494712 295 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 OR2A20P-203ENST00000498397 1268 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC117522.2-201ENST00000510049 657 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 SETP7-201ENST00000552169 453 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC012435.1-202ENST00000568772 240 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL590229.1-201ENST00000603497 542 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC091965.5-201ENST00000624785 342 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 AC092447.10-201ENST00000620607 1652 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms