Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.3□□□□□ -1.56
SF3A1Q15459 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SF3A1Q15459 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.3□□□□□ -1.56
SF3A1Q15459 RNU6-600P-201ENST00000362524 99 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 RNU6-282P-201ENST00000365357 103 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 Z98745.1-201ENST00000402553 494 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC009237.10-201ENST00000414112 510 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC5.3□□□□□ -1.56
SF3A1Q15459 RPL21P66-201ENST00000426566 466 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC005094.1-201ENST00000440420 368 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.3□□□□□ -1.56
SF3A1Q15459 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.3□□□□□ -1.56
SF3A1Q15459 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
SF3A1Q15459 AC004924.1-201ENST00000480160 781 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC083982.1-201ENST00000485679 344 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC108022.1-201ENST00000493466 478 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.3□□□□□ -1.56
SF3A1Q15459 HMGB1P29-201ENST00000505659 499 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.3□□□□□ -1.56
SF3A1Q15459 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.3□□□□□ -1.56
SF3A1Q15459 RN7SKP244-201ENST00000516513 307 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 RNU6-1220P-201ENST00000517126 108 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.3□□□□□ -1.56
SF3A1Q15459 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SF3A1Q15459 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SF3A1Q15459 SNRPGP16-201ENST00000533275 226 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC123904.3-201ENST00000547218 814 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.3□□□□□ -1.56
SF3A1Q15459 SUB1P2-201ENST00000556401 297 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC136619.2-201ENST00000563361 631 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC5.3□□□□□ -1.56
SF3A1Q15459 ELOCP28-201ENST00000590044 317 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC107304.1-201ENST00000604229 296 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AL136363.1-201ENST00000605349 337 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AL360181.4-201ENST00000621752 134 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 CR381653.2-201ENST00000624041 768 ntBASIC5.3□□□□□ -1.56
SF3A1Q15459 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SF3A1Q15459 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SF3A1Q15459 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SF3A1Q15459 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SF3A1Q15459 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC087190.4-201ENST00000574616 8334 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.29□□□□□ -1.56
SF3A1Q15459 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SF3A1Q15459 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SF3A1Q15459 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC105074.1-201ENST00000623380 3095 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 RNU6-181P-201ENST00000363225 107 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 U3.11-201ENST00000364476 212 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 SNORA23-201ENST00000365128 182 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.29□□□□□ -1.56
SF3A1Q15459 RNU6-456P-201ENST00000384493 107 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC097374.1-203ENST00000400783 485 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 RN7SKP267-201ENST00000410381 285 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC140479.3-201ENST00000418944 1126 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 MTCO1P39-201ENST00000426148 480 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AL049745.1-201ENST00000433953 286 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AC002486.1-201ENST00000435098 391 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AL662791.1-201ENST00000441992 928 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC073587.1-201ENST00000447093 876 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC007537.2-201ENST00000472093 511 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 RPL23AP65-201ENST00000475608 468 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AC110792.1-201ENST00000491826 472 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 RPL36AP41-201ENST00000493820 306 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.29□□□□□ -1.56
SF3A1Q15459 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.29□□□□□ -1.56
SF3A1Q15459 RNA5SP446-201ENST00000515955 82 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 RNU6-390P-201ENST00000516259 103 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 RNU6-445P-201ENST00000516949 107 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 MTND1P5-201ENST00000517906 940 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 IGKV2D-23-201ENST00000518179 286 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AP001330.4-201ENST00000604350 154 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AL139286.1-201ENST00000604465 483 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AC012443.1-201ENST00000605605 231 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC126118.1-201ENST00000607744 628 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.29□□□□□ -1.56
SF3A1Q15459 AC091905.1-201ENST00000624400 311 ntBASIC5.29□□□□□ -1.56
SF3A1Q15459 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SF3A1Q15459 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.29□□□□□ -1.56
SF3A1Q15459 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.29□□□□□ -1.56
SF3A1Q15459 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SF3A1Q15459 NOL8P1-201ENST00000508336 3529 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SF3A1Q15459 RN7SKP44-201ENST00000363602 316 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 RNA5SP189-201ENST00000364920 115 ntBASIC5.28□□□□□ -1.56
SF3A1Q15459 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms