Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CPSF4O95639 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CPSF4O95639 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
CPSF4O95639 MIR6073-201ENST00000352083 89 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 RNU6-1243P-201ENST00000364028 107 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CPSF4O95639 MIR525-201ENST00000384978 85 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF4O95639 PAICSP7-201ENST00000419829 962 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF4O95639 RPS3AP12-201ENST00000443616 753 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 AL929288.2-201ENST00000446368 407 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AP000936.2-201ENST00000447151 681 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AC005002.1-201ENST00000447458 540 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CPSF4O95639 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF4O95639 RPL31P13-201ENST00000484151 370 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC026801.2-201ENST00000515352 425 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 SNORA31.26-201ENST00000517250 137 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AC104986.1-201ENST00000517978 436 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF4O95639 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 AL391156.1-201ENST00000554965 554 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC023824.3-201ENST00000569003 562 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 MIR4504-201ENST00000577413 92 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF4O95639 VN1R88P-201ENST00000596787 292 ntBASIC2.36□□□□□ -2.03
CPSF4O95639 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
CPSF4O95639 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CPSF4O95639 AC011978.2-201ENST00000569835 2054 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AL365361.1-201ENST00000566942 3481 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 ZNF833P-201ENST00000424938 1494 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF4O95639 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF4O95639 RNA5SP387-201ENST00000364226 106 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RNU1-51P-201ENST00000365345 176 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 U8.8-201ENST00000365399 135 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.35□□□□□ -2.03
CPSF4O95639 RNU6-1151P-201ENST00000384684 107 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 SNORD65C-201ENST00000390962 71 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RPL23AP47-201ENST00000408017 460 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RNU6-77P-201ENST00000410554 91 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RAD23BP2-201ENST00000416003 1207 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF4O95639 RPL7P46-201ENST00000425129 740 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 ARL5AP4-201ENST00000430731 512 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RPL21P112-201ENST00000434403 463 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RPL7P59-201ENST00000447700 943 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AL096803.2-201ENST00000450032 677 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF4O95639 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF4O95639 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.35□□□□□ -2.03
CPSF4O95639 SETP6-201ENST00000479329 568 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF4O95639 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF4O95639 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.35□□□□□ -2.03
CPSF4O95639 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.35□□□□□ -2.03
CPSF4O95639 MTND4LP22-201ENST00000508209 276 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC121161.1-201ENST00000510606 652 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 RNU6-416P-201ENST00000516265 103 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC004217.3-201ENST00000551552 878 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 MTCYBP28-201ENST00000566728 1132 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC010735.1-201ENST00000567305 1026 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.35□□□□□ -2.03
CPSF4O95639 AC005776.1-201ENST00000603164 290 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 ATP1B3P1-201ENST00000605365 821 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC090425.2-201ENST00000608818 501 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC005156.1-201ENST00000613371 573 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC010297.1-201ENST00000623948 149 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC097372.4-201ENST00000625025 466 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC092184.1-201ENST00000625042 715 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AP001002.2-201ENST00000625137 386 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF4O95639 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.35□□□□□ -2.03
CPSF4O95639 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF4O95639 MTCO1P6-201ENST00000481192 1384 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
CPSF4O95639 AL512283.1-201ENST00000606756 1384 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 AC025263.3-201ENST00000622965 1396 ntBASIC2.35□□□□□ -2.03
CPSF4O95639 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
CPSF4O95639 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.34□□□□□ -2.03
CPSF4O95639 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CPSF4O95639 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CPSF4O95639 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CPSF4O95639 OR5J1P-201ENST00000313544 939 ntBASIC2.34□□□□□ -2.03
CPSF4O95639 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CPSF4O95639 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
CPSF4O95639 Y_RNA.333-201ENST00000365274 102 ntBASIC2.34□□□□□ -2.03
CPSF4O95639 RNU6-609P-201ENST00000365459 107 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms