Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC11O43248 FRG1BP-201ENST00000278882 761 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 RNU6-50P-201ENST00000362356 103 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 RNA5SP399-201ENST00000364003 117 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 Y_RNA.560-201ENST00000384689 102 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC11O43248 DUTP6-201ENST00000425573 462 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC11O43248 ELOCP8-201ENST00000439309 332 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC108734.1-201ENST00000439549 399 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 ELOCP15-201ENST00000442090 332 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 NOTCH2P1-201ENST00000443481 624 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC112653.1-201ENST00000443851 386 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 HMGB3P22-202ENST00000451823 572 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC11O43248 SNORD121B-201ENST00000458838 81 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 RPL23AP62-201ENST00000463396 453 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC091153.1-201ENST00000466297 402 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC11O43248 RN7SL323P-201ENST00000494712 295 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC11O43248 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC118465.1-201ENST00000513820 1271 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 MTCO2P32-201ENST00000514865 403 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 RNU6-528P-201ENST00000516926 100 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC11O43248 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC007834.2-201ENST00000536310 343 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC023161.2-201ENST00000551218 780 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 SETP2-201ENST00000553886 926 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC090888.1-201ENST00000561335 1141 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC022968.1-201ENST00000567372 442 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 CYP4A43P-201ENST00000568156 121 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC034268.2-201ENST00000571784 482 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 MTCYBP22-201ENST00000603788 447 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 AC112187.2-201ENST00000604345 283 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXC11O43248 FP236240.3-201ENST00000623061 327 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.07□□□□□ -1.76
HOXC11O43248 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC11O43248 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC11O43248 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXC11O43248 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXC11O43248 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXC11O43248 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
HOXC11O43248 AC024560.2-201ENST00000507981 1497 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXC11O43248 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC11O43248 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC11O43248 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXC11O43248 RNU6-500P-201ENST00000362349 107 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 RNU6-553P-201ENST00000364047 96 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 RNA5SP171-201ENST00000391071 115 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC11O43248 AL590704.1-201ENST00000402856 794 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AMD1P2-201ENST00000412936 992 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC11O43248 Z97055.1-201ENST00000419730 712 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 USP9YP26-201ENST00000421008 661 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC11O43248 BX119904.4-201ENST00000424402 301 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC079780.1-201ENST00000428259 207 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXC11O43248 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXC11O43248 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC11O43248 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXC11O43248 VN1R34P-201ENST00000447387 883 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 RPL23AP31-201ENST00000456160 467 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 OR6K1P-201ENST00000456766 971 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC091564.1-201ENST00000464563 479 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC006517.1-201ENST00000480485 328 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 RPS4XP13-201ENST00000483219 789 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC111000.2-201ENST00000507775 550 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXC11O43248 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC11O43248 RNU6-759P-201ENST00000516740 103 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC11O43248 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC11O43248 MTCO1P47-201ENST00000523889 1271 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXC11O43248 SNRPGP16-201ENST00000533275 226 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXC11O43248 AC009101.1-201ENST00000568135 242 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXC11O43248 AC007599.1-201ENST00000568688 1174 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 MIR544B-201ENST00000582372 78 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms