Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RN7SKP83-201ENST00000516512 178 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC007375.1-201ENST00000554513 578 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MIR5186-201ENST00000577504 120 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC091042.1-201ENST00000579213 173 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC006130.2-201ENST00000586202 326 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC018462.2-201ENST00000605375 395 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC133104.2-201ENST00000615272 193 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC119674.1-212ENST00000641155 993 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC139713.2-214ENST00000642059 1811 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SCARNA15-201ENST00000607520 4325 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RN7SKP95-201ENST00000362860 303 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.111-201ENST00000363248 100 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SNORA66-201ENST00000384792 133 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL590762.2-201ENST00000395798 571 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL078599.1-201ENST00000402075 293 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU4-25P-201ENST00000410569 230 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TBCAP2-201ENST00000416175 326 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MCFD2P1-201ENST00000417812 300 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 VTI1BP4-201ENST00000427516 527 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RSU1P2-202ENST00000437884 485 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC092809.1-201ENST00000441469 474 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 DDX3P2-201ENST00000446138 111 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC104058.1-201ENST00000448028 297 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PSMC1P13-201ENST00000458195 985 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPL39P5-202ENST00000512505 151 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-635P-201ENST00000516651 102 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNA5SP230-201ENST00000517039 122 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RANP9-201ENST00000519957 271 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL157817.1-201ENST00000614264 790 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL162373.1-201ENST00000620433 407 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC138627.2-201ENST00000624202 601 ntBASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.59□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL138820.1-201ENST00000617901 5305 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ASNSP3-201ENST00000451989 1306 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-666P-201ENST00000363499 107 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-289P-201ENST00000364093 107 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.527-201ENST00000384573 102 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR634-201ENST00000385208 97 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL37P10-201ENST00000412884 288 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC019097.1-201ENST00000424783 735 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL353777.1-201ENST00000425552 326 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 HMGB3P10-201ENST00000434734 572 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPS3AP54-201ENST00000435535 734 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC026726.1-201ENST00000512859 601 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU4-29P-201ENST00000515943 174 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL137100.2-201ENST00000555786 315 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC093249.4-201ENST00000564755 259 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR5690-201ENST00000583739 73 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR4715-201ENST00000584117 79 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC062037.2-201ENST00000610137 73 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC023509.5-201ENST00000617434 807 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC011944.2-201ENST00000624440 683 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms