Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 AC105749.1-201ENST00000631338 2008 ntBASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
VPS9D1Q9Y2B5 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 CARF-203ENST00000414439 2099 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RNU1-130P-201ENST00000363930 160 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 Y_RNA.324-201ENST00000365165 102 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RNU6-429P-201ENST00000384582 108 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 SNORA7A-201ENST00000384765 139 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 SNORD94-201ENST00000386037 137 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 SNORA46.1-201ENST00000391069 153 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 MIR1266-201ENST00000408125 84 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RPL23AP26-201ENST00000412728 464 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RPL30P13-201ENST00000418873 348 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 GAPDHP58-201ENST00000438477 1006 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AL162389.1-201ENST00000449233 177 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC104164.1-201ENST00000460282 590 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC010683.1-201ENST00000473673 378 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RN7SL165P-201ENST00000477476 291 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RN7SL413P-201ENST00000482700 297 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 VN1R105P-201ENST00000486595 910 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AL160314.1-201ENST00000490836 438 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC009120.1-201ENST00000493458 473 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 RN7SL802P-201ENST00000577858 299 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AL355816.1-201ENST00000607951 118 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AL589743.6-201ENST00000611025 117 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 TUG1_4.1-201ENST00000619464 181 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AC068213.1-201ENST00000625124 226 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 AL078621.3-201ENST00000623707 2042 ntBASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.37□□□□□ -1.39
VPS9D1Q9Y2B5 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 FANCD2P2-201ENST00000437591 1400 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 RNU1-84P-201ENST00000365447 164 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 RN7SKP221-201ENST00000410420 301 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 RNU6-1064P-201ENST00000410626 104 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 RNU5A-5P-201ENST00000411054 116 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AC116036.1-201ENST00000412199 367 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 HMGA1P8-201ENST00000414130 321 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 CYCSP33-201ENST00000414485 327 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AL512844.2-201ENST00000433990 593 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 CEACAMP1-201ENST00000434624 1035 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 MRPS21P3-201ENST00000436696 262 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AC013403.1-201ENST00000436954 263 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AL360271.2-201ENST00000447710 161 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AL596266.1-201ENST00000448132 400 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 RNU6-953P-201ENST00000459154 107 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AC010343.2-201ENST00000510162 224 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AC131935.1-201ENST00000524621 333 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 AP004242.1-201ENST00000533701 349 ntBASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.36□□□□□ -1.39
VPS9D1Q9Y2B5 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms