Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC019097.1-201ENST00000424783 735 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 ARPC3P1-201ENST00000437218 533 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC133473.1-201ENST00000455173 299 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC008481.1-201ENST00000463278 396 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC092324.1-201ENST00000468671 324 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 HSPE1P6-201ENST00000479457 291 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 CDC42P4-201ENST00000510507 563 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 SNORA18.6-201ENST00000516792 115 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC107934.1-201ENST00000522215 217 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC008489.1-201ENST00000524271 483 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AP003181.2-201ENST00000528941 181 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 OR4H12P-201ENST00000556269 907 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 MIR3118-1-201ENST00000581787 76 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC105224.1-201ENST00000587055 421 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC079089.3-201ENST00000603094 673 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC103591.3-201ENST00000608684 209 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC104073.3-201ENST00000610942 955 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC009509.4-201ENST00000619202 509 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC007546.2-201ENST00000623996 360 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC110994.2-201ENST00000635481 492 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX56Q9NY93 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX56Q9NY93 AC116667.1-201ENST00000604855 2072 ntBASIC4.68□□□□□ -1.66
DDX56Q9NY93 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
DDX56Q9NY93 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
DDX56Q9NY93 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
DDX56Q9NY93 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNY4P16-201ENST00000364768 94 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNY3P13-201ENST00000365542 102 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNA5SP87-201ENST00000384155 118 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNU6-297P-201ENST00000384636 107 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNA5SP397-201ENST00000391323 118 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RNU6-248P-201ENST00000410720 107 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RN7SKP167-201ENST00000411047 285 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 HMGB3P23-201ENST00000414981 585 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RPS15AP12-201ENST00000419498 388 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AL589872.1-201ENST00000426602 288 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC008850.1-201ENST00000427546 362 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AL049745.1-201ENST00000433953 286 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 CYCSP43-201ENST00000438233 310 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 CBX1P1-201ENST00000440184 427 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 USP9YP15-201ENST00000442391 422 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 RPL9P32-201ENST00000464118 620 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 RPS26P28-201ENST00000470806 348 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC020893.1-201ENST00000502452 580 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC010587.1-201ENST00000505809 469 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
DDX56Q9NY93 SNORA31.22-201ENST00000517204 135 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC100870.1-201ENST00000522035 505 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AP001804.3-201ENST00000525146 880 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC055876.1-202ENST00000567053 138 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC020910.2-201ENST00000603635 610 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC211433.2-201ENST00000608433 387 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC006566.1-201ENST00000608943 513 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC108747.1-201ENST00000609508 535 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 FRG1KP-201ENST00000623592 341 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.67□□□□□ -1.66
DDX56Q9NY93 AC010300.1-201ENST00000600671 5134 ntBASIC4.67□□□□□ -1.66
DDX56Q9NY93 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
DDX56Q9NY93 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 211.2 ms