Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.74
SENP3Q9H4L4 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC10.4□□□□□ -0.74
SENP3Q9H4L4 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
SENP3Q9H4L4 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
SENP3Q9H4L4 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.75
SENP3Q9H4L4 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC10.4□□□□□ -0.75
SENP3Q9H4L4 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
SENP3Q9H4L4 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ZNF674-207ENST00000523374 4073 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 RNA5SP472-201ENST00000363868 119 ntBASIC10.39□□□□□ -0.75
SENP3Q9H4L4 U3.18-201ENST00000390880 216 ntBASIC10.39□□□□□ -0.75
SENP3Q9H4L4 AL353133.1-201ENST00000407695 401 ntBASIC10.39□□□□□ -0.75
SENP3Q9H4L4 Y_RNA.611-201ENST00000410682 108 ntBASIC10.39□□□□□ -0.75
SENP3Q9H4L4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 AL356575.1-201ENST00000603008 283 ntBASIC10.39□□□□□ -0.75
SENP3Q9H4L4 PFKM-232ENST00000629846 381 ntTSL 4 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 SELP-202ENST00000367786 2402 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SENP3Q9H4L4 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 RORB-202ENST00000396204 2996 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AC025470.1-201ENST00000510053 2032 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 CPS1-IT1-201ENST00000628368 2306 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AC138207.6-201ENST00000579164 1967 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 DYNLT3P1-201ENST00000378574 347 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 RNU6-882P-201ENST00000391025 103 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 MIR320B2-201ENST00000408479 138 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 U3.37-201ENST00000408528 213 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AC234781.4-201ENST00000419384 244 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AL662874.1-201ENST00000426065 230 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AP004607.1-201ENST00000524456 203 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AC105245.1-201ENST00000581934 244 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 AL359198.2-201ENST00000611836 194 ntBASIC10.38□□□□□ -0.75
SENP3Q9H4L4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 GLRA2-201ENST00000218075 3216 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
SENP3Q9H4L4 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 ACVR1-201ENST00000263640 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 GJC1-201ENST00000330514 3295 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 Y_RNA.245-201ENST00000364493 95 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 RNA5SP279-201ENST00000365513 117 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 Y_RNA.361-201ENST00000365515 120 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 MIR518C-201ENST00000384822 101 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 RNA5SP53-201ENST00000391299 120 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 FUNDC2P2-202ENST00000443452 493 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 GAPDHP53-201ENST00000458397 924 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 RNU6-437P-201ENST00000459408 95 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 AC022296.2-201ENST00000512424 202 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 AC087360.1-201ENST00000518788 616 ntBASIC10.37□□□□□ -0.75
SENP3Q9H4L4 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 AF254983.1-201ENST00000612267 3336 ntTSL 5 BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
SENP3Q9H4L4 CREM-208ENST00000361599 2170 ntTSL 5 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms