Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 Z99496.1-201ENST00000469424 1477 ntBASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
ZNF540Q8NDQ6 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC234772.1-201ENST00000377927 937 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 U3.39-201ENST00000408569 239 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 MIR1289-1-201ENST00000408836 144 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RNU2-43P-201ENST00000410306 190 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RAB9AP3-201ENST00000412737 573 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC017079.2-201ENST00000416102 485 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC245291.1-201ENST00000419501 328 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC069157.1-201ENST00000421749 137 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 FO393414.1-201ENST00000428697 1184 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 SAR1AP4-201ENST00000429225 591 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL645931.1-201ENST00000439737 410 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RPL23AP58-201ENST00000440453 469 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL357552.1-201ENST00000445254 415 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC125238.1-201ENST00000448842 249 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RAB9AP1-201ENST00000449393 573 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 HMGN1P18-201ENST00000457642 277 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RPL21P18-201ENST00000469899 480 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RN7SL601P-201ENST00000471221 293 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AP000563.1-201ENST00000490865 758 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC006499.5-201ENST00000505037 514 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC093853.1-201ENST00000515689 483 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 RNU6-579P-201ENST00000516879 102 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 SNORA31.26-201ENST00000517250 137 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC026333.2-201ENST00000542164 106 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 DUXAP6-201ENST00000553858 601 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 HMGB1P14-201ENST00000557424 591 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 MIR5187-201ENST00000583479 76 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 HSPE1P7-201ENST00000604681 321 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC006077.1-201ENST00000604746 343 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AP001521.1-201ENST00000609150 300 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL592148.2-201ENST00000612210 372 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC018816.2-201ENST00000621460 353 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC027309.3-201ENST00000623419 351 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC012442.3-202ENST00000636742 206 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 U6.101-201ENST00000637707 76 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC006927.2-201ENST00000639256 389 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AP000553.6-201ENST00000641242 118 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 AC009812.4-201ENST00000569134 1805 ntBASIC3.26□□□□□ -1.89
ZNF540Q8NDQ6 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 Y_RNA.25-201ENST00000362528 102 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 BX842559.1-201ENST00000419615 532 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC104332.2-201ENST00000429959 156 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 RPS27P29-201ENST00000463110 252 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AL049714.1-201ENST00000466686 347 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 RNU1-95P-201ENST00000516357 160 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 RNU1-128P-201ENST00000516704 160 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 SNORA70.19-201ENST00000516717 90 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC026403.1-201ENST00000518938 295 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AP000867.2-201ENST00000532468 320 ntBASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF540Q8NDQ6 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms