Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.4□□□□□ -1.54
SOX4Q06945 AC096644.2-201ENST00000429278 159 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.4□□□□□ -1.54
SOX4Q06945 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC5.4□□□□□ -1.54
SOX4Q06945 AC093414.1-201ENST00000434712 514 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.4□□□□□ -1.54
SOX4Q06945 RPS26P56-201ENST00000444468 240 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 AL162395.1-201ENST00000457882 422 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AP001992.1-205ENST00000462248 379 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 PLGLA-201ENST00000465668 449 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.4□□□□□ -1.54
SOX4Q06945 AC005726.1-201ENST00000494679 427 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 MRPS35P2-201ENST00000508242 191 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.4□□□□□ -1.54
SOX4Q06945 RNA5SP392-201ENST00000516905 112 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 AC024224.1-201ENST00000538284 609 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 MTCO3P23-201ENST00000561363 289 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.4□□□□□ -1.54
SOX4Q06945 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.4□□□□□ -1.54
SOX4Q06945 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 AL109918.3-201ENST00000603072 338 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AL390240.1-201ENST00000612950 384 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 HMGB1P24-202ENST00000615653 685 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.4□□□□□ -1.54
SOX4Q06945 AL049794.2-201ENST00000616301 365 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AL596245.1-201ENST00000618994 362 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AL162373.1-201ENST00000620433 407 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 SMG1P7-201ENST00000565246 2704 ntBASIC5.4□□□□□ -1.55
SOX4Q06945 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.4□□□□□ -1.55
SOX4Q06945 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SOX4Q06945 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SOX4Q06945 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
SOX4Q06945 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.4□□□□□ -1.55
SOX4Q06945 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.4□□□□□ -1.55
SOX4Q06945 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
SOX4Q06945 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.39□□□□□ -1.55
SOX4Q06945 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 RNU6-1040P-201ENST00000383974 107 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 RNA5SP87-201ENST00000384155 118 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 SNORA70.10-201ENST00000384515 134 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 RNU6-601P-201ENST00000384540 107 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 MIR19A-201ENST00000384878 82 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SOX4Q06945 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SOX4Q06945 AL591848.1-201ENST00000413092 322 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 OR2AS1P-201ENST00000427827 319 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC006466.1-201ENST00000438721 289 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AL772161.1-201ENST00000439130 476 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 RPL21P133-201ENST00000443666 476 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 RPL21P89-201ENST00000444021 467 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 H2AFZP6-201ENST00000444403 394 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 RPL12P25-201ENST00000455592 494 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC108059.3-201ENST00000456388 214 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.39□□□□□ -1.55
SOX4Q06945 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.39□□□□□ -1.55
SOX4Q06945 AC002456.2-201ENST00000509356 380 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC016559.2-201ENST00000510759 359 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC026782.1-201ENST00000512952 449 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC026801.2-201ENST00000515352 425 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.39□□□□□ -1.55
SOX4Q06945 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.39□□□□□ -1.55
SOX4Q06945 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.39□□□□□ -1.55
SOX4Q06945 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 MIR5583-1-201ENST00000580941 59 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC104662.1-201ENST00000604448 511 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC007485.1-201ENST00000616755 206 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 AC074140.1-201ENST00000621617 208 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.39□□□□□ -1.55
SOX4Q06945 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SOX4Q06945 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 AC130650.2-201ENST00000618736 2403 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
SOX4Q06945 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SOX4Q06945 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
SOX4Q06945 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SOX4Q06945 AL442639.1-201ENST00000625030 1899 ntBASIC5.39□□□□□ -1.55
SOX4Q06945 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
SOX4Q06945 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX4Q06945 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SOX4Q06945 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms