Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
BRCA1P38398 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.09□□□□□ -1.91
BRCA1P38398 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.09□□□□□ -1.91
BRCA1P38398 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
BRCA1P38398 Y_RNA.238-201ENST00000364441 102 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
BRCA1P38398 RNU6-253P-201ENST00000384730 105 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 MTCO3P31-201ENST00000405526 789 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 HMGB3P31-201ENST00000413333 595 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 AC080125.1-201ENST00000414888 684 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 TVP23BP2-201ENST00000455082 615 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.09□□□□□ -1.92
BRCA1P38398 AC092436.1-201ENST00000506450 503 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 MTND4P2-201ENST00000507767 1203 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.09□□□□□ -1.92
BRCA1P38398 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.09□□□□□ -1.92
BRCA1P38398 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.09□□□□□ -1.92
BRCA1P38398 AP004242.1-201ENST00000533701 349 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 OR4G2P-202ENST00000641004 1759 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
BRCA1P38398 AC002543.1-201ENST00000299783 1954 ntBASIC3.09□□□□□ -1.92
BRCA1P38398 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
BRCA1P38398 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
BRCA1P38398 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.08□□□□□ -1.92
BRCA1P38398 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
BRCA1P38398 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.08□□□□□ -1.92
BRCA1P38398 RNA5SP107-201ENST00000411358 122 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
BRCA1P38398 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.08□□□□□ -1.92
BRCA1P38398 RPL37P6-202ENST00000464216 403 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.08□□□□□ -1.92
BRCA1P38398 RN7SKP24-201ENST00000515888 284 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 RN7SKP60-201ENST00000516985 239 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 RANP3-201ENST00000530970 276 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.08□□□□□ -1.92
BRCA1P38398 MIR6864-201ENST00000617935 70 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 AC090617.9-201ENST00000623751 147 ntBASIC3.08□□□□□ -1.92
BRCA1P38398 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
BRCA1P38398 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
BRCA1P38398 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
BRCA1P38398 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
BRCA1P38398 SNORD51.1-201ENST00000365405 77 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
BRCA1P38398 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 AL121882.1-201ENST00000422893 417 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.07□□□□□ -1.92
BRCA1P38398 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC3.07□□□□□ -1.92
BRCA1P38398 CBX3P5-201ENST00000552017 521 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 AC095057.3-201ENST00000567102 1157 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
BRCA1P38398 C2orf27A-204ENST00000623058 969 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
BRCA1P38398 AC138915.3-201ENST00000562908 1389 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
BRCA1P38398 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
BRCA1P38398 RNA5SP167-201ENST00000365461 116 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 RNU6-883P-201ENST00000384597 107 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 RPL31P2-201ENST00000413849 377 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 HMGB3P23-201ENST00000414981 585 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.07□□□□□ -1.92
BRCA1P38398 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.07□□□□□ -1.92
BRCA1P38398 RPL23AP62-201ENST00000463396 453 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.07□□□□□ -1.92
BRCA1P38398 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.07□□□□□ -1.92
BRCA1P38398 RN7SKP234-201ENST00000517173 224 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.07□□□□□ -1.92
BRCA1P38398 OR11H5P-201ENST00000554039 926 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.07□□□□□ -1.92
BRCA1P38398 AC005156.1-201ENST00000613371 573 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 CR381653.2-201ENST00000624041 768 ntBASIC3.07□□□□□ -1.92
BRCA1P38398 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.06□□□□□ -1.92
BRCA1P38398 GABPAP-201ENST00000419271 1356 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
BRCA1P38398 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.06□□□□□ -1.92
BRCA1P38398 RNU6-252P-201ENST00000363232 107 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 RNA5SP27-201ENST00000363839 119 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 RPS15AP6-201ENST00000420703 385 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 MTND4LP7-201ENST00000431728 294 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 AC068135.1-201ENST00000446164 246 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 RN7SL75P-201ENST00000461926 281 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 AC104689.1-201ENST00000473356 768 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 AC132942.1-201ENST00000486753 483 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.06□□□□□ -1.92
BRCA1P38398 POU5F1P7-201ENST00000508759 541 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.06□□□□□ -1.92
BRCA1P38398 OR8L1P-201ENST00000534005 955 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.06□□□□□ -1.92
BRCA1P38398 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.06□□□□□ -1.92
BRCA1P38398 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.06□□□□□ -1.92
BRCA1P38398 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.06□□□□□ -1.92
BRCA1P38398 AC010338.1-201ENST00000621823 717 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 MIR4278-201ENST00000636094 69 ntBASIC3.06□□□□□ -1.92
BRCA1P38398 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.06□□□□□ -1.92
BRCA1P38398 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.06□□□□□ -1.92
BRCA1P38398 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
BRCA1P38398 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
BRCA1P38398 RNU1-73P-201ENST00000383971 164 ntBASIC3.05□□□□□ -1.92
BRCA1P38398 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.05□□□□□ -1.92
BRCA1P38398 AL662791.1-201ENST00000441992 928 ntBASIC3.05□□□□□ -1.92
BRCA1P38398 TXNP6-201ENST00000510190 310 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms