Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.07□□□□□ -1.92
HOXC4P09017 AC093732.2-201ENST00000607950 274 ntBASIC3.07□□□□□ -1.92
HOXC4P09017 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC4P09017 AP000484.1-201ENST00000620067 1252 ntBASIC3.07□□□□□ -1.92
HOXC4P09017 AC022079.1-201ENST00000621546 602 ntBASIC3.07□□□□□ -1.92
HOXC4P09017 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC4P09017 AL355596.1-201ENST00000565399 3996 ntBASIC3.07□□□□□ -1.92
HOXC4P09017 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC4P09017 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC4P09017 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC4P09017 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC4P09017 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC4P09017 RNU6-335P-201ENST00000364563 113 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.06□□□□□ -1.92
HOXC4P09017 DYNLT3P1-201ENST00000378574 347 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC4P09017 MCTS2P-201ENST00000394552 546 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AP002784.2-201ENST00000397300 549 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 RNU6-272P-201ENST00000411028 104 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 GLRXP1-201ENST00000423261 334 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXC4P09017 BX679664.1-201ENST00000434429 253 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC016696.1-201ENST00000446949 318 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 MTCYBP11-201ENST00000447254 1109 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AL031313.1-201ENST00000448435 256 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC087879.1-201ENST00000474343 374 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC4P09017 RPS4XP22-201ENST00000480755 780 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 RNF138P1-201ENST00000502765 546 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC117529.2-201ENST00000512159 2068 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC4P09017 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC4P09017 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC4P09017 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC4P09017 MTND2P38-201ENST00000522536 667 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 OR10V3P-201ENST00000525712 725 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC4P09017 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC4P09017 AL121603.1-201ENST00000553815 142 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC4P09017 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC008687.2-201ENST00000597865 520 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC4P09017 PRELID3BP8-201ENST00000604148 295 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 IGHV3-29-201ENST00000604817 344 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AL009028.1-201ENST00000604895 802 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC107294.3-201ENST00000609211 526 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AL591516.1-201ENST00000611326 274 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC105227.2-201ENST00000615075 605 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AP002791.1-201ENST00000623291 381 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC068057.2-201ENST00000624047 895 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AC120349.3-201ENST00000624377 529 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 AP000676.4-201ENST00000624659 623 ntBASIC3.06□□□□□ -1.92
HOXC4P09017 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC4P09017 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXC4P09017 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC4P09017 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC4P09017 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC4P09017 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC4P09017 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC4P09017 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC4P09017 AL353746.1-201ENST00000566293 6881 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC4P09017 RNA5SP295-201ENST00000362655 121 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 SNORA71.1-201ENST00000364523 117 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 SNORA54-201ENST00000384281 123 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC4P09017 MTATP6P20-201ENST00000414147 562 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 XKRYP1-201ENST00000423438 492 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 CETN4P-201ENST00000432407 469 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 XKRYP2-201ENST00000432915 492 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 RPL23AP22-201ENST00000437556 453 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AL591719.1-201ENST00000444669 744 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
HOXC4P09017 DNAJC19P8-201ENST00000452887 259 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 MTCO2P6-201ENST00000463134 685 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 ST13P14-201ENST00000474095 734 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC068724.1-201ENST00000487100 792 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC068657.1-201ENST00000520807 306 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC4P09017 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC4P09017 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC4P09017 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXC4P09017 OR8K4P-201ENST00000534608 872 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 ZNF971P-201ENST00000562068 1249 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms