Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-223P-201ENST00000362830 107 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 RPL7AP73-201ENST00000413490 353 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 C1DP2-201ENST00000418167 426 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 MTCO1P39-201ENST00000426148 480 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC119618.1-201ENST00000434191 222 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 SCARNA10-201ENST00000459255 330 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 RPL7L1P8-201ENST00000469911 741 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC110792.1-201ENST00000491826 472 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 RNU2-58P-201ENST00000516403 183 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 DEFB108D-201ENST00000527787 222 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AL133153.1-201ENST00000557756 303 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 MTCYBP13-201ENST00000578634 1093 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC122108.2-201ENST00000611946 526 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC007546.1-201ENST00000619452 559 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 AC091953.2-201ENST00000623979 160 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 MIR4275-201ENST00000636486 87 ntBASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC9Q9Y3X0 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AC005832.2-201ENST00000538921 1430 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 EEF1A1P42-201ENST00000613436 1331 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AL133243.3-201ENST00000617415 3004 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 XIAPP3-201ENST00000312918 795 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 RNA5SP513-201ENST00000364648 118 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 RN7SKP16-201ENST00000410180 299 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 GOT2P5-201ENST00000433995 546 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 NMNAT1P2-201ENST00000435192 860 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 TIMM9P1-201ENST00000436122 256 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 ARPC3P1-201ENST00000437218 533 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 SNRPGP16-201ENST00000533275 226 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AC099489.2-201ENST00000574976 260 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 NRBF2P1-201ENST00000587407 859 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AC008739.3-201ENST00000603262 127 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AC091805.2-201ENST00000603848 235 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 AC093838.1-201ENST00000613014 469 ntBASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC9Q9Y3X0 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC9Q9Y3X0 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC009643.2-201ENST00000603543 1448 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 USP8P1-201ENST00000494673 3183 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 MFSD8-242ENST00000641690 4199 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 RNY4P16-201ENST00000364768 94 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC013429.2-201ENST00000418798 781 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 PDSS1P1-201ENST00000422953 1114 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL589872.1-201ENST00000426602 288 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 RPS29P7-201ENST00000439662 171 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 RPL7AP61-201ENST00000443410 636 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL162151.2-201ENST00000448875 158 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 GAPDHP17-201ENST00000449858 1001 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 RPS11P1-201ENST00000451072 473 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 RPL23AP31-201ENST00000456160 467 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 TPT1P7-201ENST00000458300 517 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC020893.1-201ENST00000502452 580 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 FTH1P21-201ENST00000512179 511 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 RNU2-46P-201ENST00000517038 113 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 DEFB108A-201ENST00000530110 222 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 OR5D17P-201ENST00000531492 978 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms