Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR5708-201ENST00000579723 85 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AP001029.3-201ENST00000588063 596 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AP002371.2-201ENST00000624450 503 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 GDI2P1-201ENST00000429312 1336 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 ARF4P3-201ENST00000397387 509 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 HMGN1P24-201ENST00000412282 298 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 LUZP4P1-201ENST00000415420 344 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 YPEL5P1-201ENST00000419731 367 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 DPRXP1-201ENST00000426312 460 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 RPL23AP69-201ENST00000431134 458 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC093155.1-201ENST00000440164 826 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 RABEPKP1-201ENST00000440529 1026 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 Z95327.1-201ENST00000446082 482 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 CYCSP35-201ENST00000451978 304 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 BTF3P5-201ENST00000457252 467 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC006499.5-201ENST00000505037 514 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 SUMO2P5-201ENST00000506790 245 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AP001207.2-201ENST00000519490 539 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 OR4P1P-201ENST00000530808 1136 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC006116.7-201ENST00000590141 756 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AL159169.3-201ENST00000608871 561 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC093673.2-201ENST00000609674 331 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 VIS1.1-201ENST00000610517 203 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AL591516.1-201ENST00000611326 274 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 AC034229.5-201ENST00000624258 185 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 ZNF663P-202ENST00000641770 1131 ntBASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC40Q4G0X9 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 U3.11-201ENST00000364476 212 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 SNORD65.1-201ENST00000390889 71 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 MTCO1P56-201ENST00000401674 224 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC109780.2-201ENST00000413467 845 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 SDCBPP3-201ENST00000419629 891 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 MTCO1P3-201ENST00000429327 192 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 SEPT7P5-201ENST00000434048 306 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AL445669.2-201ENST00000454425 421 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC091564.1-201ENST00000464563 479 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC017015.1-201ENST00000477387 286 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 KLRA1P-201ENST00000503499 986 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 RNU6-27P-201ENST00000516146 107 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 RN7SKP157-201ENST00000516174 282 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 DEFB130C-202ENST00000530001 230 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 LARP7P2-201ENST00000575306 125 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC005951.1-201ENST00000576706 485 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC073657.2-201ENST00000605661 303 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC016877.3-201ENST00000606778 504 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AP001521.1-201ENST00000609150 300 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 RNU6-1192P-201ENST00000612197 107 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AL110115.1-201ENST00000614396 364 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC231759.1-201ENST00000616455 597 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 RNU6-489P-201ENST00000618289 107 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 MTCO1P23-201ENST00000415223 1526 ntBASIC3.53□□□□□ -1.84
CCDC40Q4G0X9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AL049780.3-201ENST00000624612 1583 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 140.1 ms