Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSX1P28360 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MSX1P28360 RNA5SP110-201ENST00000362638 115 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RNU6-611P-201ENST00000384276 104 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RNU6-45P-201ENST00000384471 107 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RNU2-21P-201ENST00000410368 188 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 AL353662.1-201ENST00000439099 327 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RPL23AP33-201ENST00000442301 452 ntBASIC5.54□□□□□ -1.52
MSX1P28360 FHP1-201ENST00000442741 703 ntBASIC5.54□□□□□ -1.52
MSX1P28360 FTLP8-201ENST00000446770 267 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC010655.1-201ENST00000449336 292 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX1P28360 AL138752.1-201ENST00000452964 351 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RNU7-169P-201ENST00000459456 61 ntBASIC5.54□□□□□ -1.52
MSX1P28360 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RPL31P60-201ENST00000478450 367 ntBASIC5.54□□□□□ -1.52
MSX1P28360 FTH1P24-201ENST00000503502 462 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX1P28360 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.54□□□□□ -1.52
MSX1P28360 SNORD46.2-201ENST00000516021 102 ntBASIC5.54□□□□□ -1.52
MSX1P28360 Y_RNA.703-201ENST00000516846 111 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC109329.1-201ENST00000518744 317 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX1P28360 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX1P28360 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX1P28360 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSX1P28360 AC012669.1-201ENST00000603209 283 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC010900.2-201ENST00000604508 210 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AL161616.1-201ENST00000611867 286 ntBASIC5.54□□□□□ -1.52
MSX1P28360 TUG1_2.1-201ENST00000614234 87 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC245014.3-201ENST00000618589 347 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC127024.6-201ENST00000621598 424 ntBASIC5.54□□□□□ -1.52
MSX1P28360 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.54□□□□□ -1.52
MSX1P28360 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX1P28360 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSX1P28360 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
MSX1P28360 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSX1P28360 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 AL049555.1-201ENST00000562834 1933 ntBASIC5.54□□□□□ -1.52
MSX1P28360 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
MSX1P28360 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
MSX1P28360 AC010266.2-201ENST00000564741 3255 ntBASIC5.54□□□□□ -1.52
MSX1P28360 RBMY1HP-201ENST00000382759 1389 ntBASIC5.54□□□□□ -1.52
MSX1P28360 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 MIR323A-201ENST00000362199 86 ntBASIC5.53□□□□□ -1.52
MSX1P28360 RNA5SP477-201ENST00000362639 119 ntBASIC5.53□□□□□ -1.52
MSX1P28360 Y_RNA.48-201ENST00000362710 103 ntBASIC5.53□□□□□ -1.52
MSX1P28360 Y_RNA.480-201ENST00000384364 102 ntBASIC5.53□□□□□ -1.52
MSX1P28360 SNORD58.1-201ENST00000391313 66 ntBASIC5.53□□□□□ -1.52
MSX1P28360 PCNPP3-201ENST00000393579 471 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AL121835.1-201ENST00000404250 354 ntBASIC5.53□□□□□ -1.52
MSX1P28360 RNU6-1203P-201ENST00000410703 110 ntBASIC5.53□□□□□ -1.52
MSX1P28360 RNU2-25P-201ENST00000411041 191 ntBASIC5.53□□□□□ -1.52
MSX1P28360 MYL6P5-201ENST00000412707 459 ntBASIC5.53□□□□□ -1.52
MSX1P28360 RPS23P10-201ENST00000416185 486 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 RPS12P5-201ENST00000423449 371 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX1P28360 AC023141.3-201ENST00000436698 278 ntBASIC5.53□□□□□ -1.52
MSX1P28360 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.53□□□□□ -1.52
MSX1P28360 AC008264.1-201ENST00000447612 367 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AC016027.4-201ENST00000450866 277 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX1P28360 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX1P28360 ACA64.1-201ENST00000459171 127 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.53□□□□□ -1.52
MSX1P28360 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX1P28360 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AC090151.1-201ENST00000520784 730 ntBASIC5.53□□□□□ -1.52
MSX1P28360 CBX3P8-201ENST00000532412 525 ntBASIC5.53□□□□□ -1.52
MSX1P28360 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX1P28360 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX1P28360 RNU4ATAC-201ENST00000580972 127 ntBASIC5.53□□□□□ -1.52
MSX1P28360 MIR4443-201ENST00000585052 53 ntBASIC5.53□□□□□ -1.52
MSX1P28360 NF1P5-201ENST00000588287 448 ntBASIC5.53□□□□□ -1.52
MSX1P28360 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.53□□□□□ -1.52
MSX1P28360 AC006023.2-201ENST00000609916 167 ntBASIC5.53□□□□□ -1.52
MSX1P28360 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 AC073488.3-201ENST00000631611 778 ntBASIC5.53□□□□□ -1.52
MSX1P28360 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
MSX1P28360 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.53□□□□□ -1.52
MSX1P28360 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSX1P28360 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 ANKRD36BP1-201ENST00000358576 1779 ntBASIC5.52□□□□□ -1.53
MSX1P28360 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.52□□□□□ -1.53
MSX1P28360 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.52□□□□□ -1.53
MSX1P28360 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms