Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.59□□□□□ -1.84
CCDC88BA6NC98 TBCAP3-201ENST00000512475 312 ntBASIC3.59□□□□□ -1.84
CCDC88BA6NC98 RNU6-1334P-201ENST00000516032 105 ntBASIC3.59□□□□□ -1.84
CCDC88BA6NC98 AC007536.1-201ENST00000533382 349 ntBASIC3.59□□□□□ -1.84
CCDC88BA6NC98 AL137847.3-201ENST00000611521 109 ntBASIC3.59□□□□□ -1.84
CCDC88BA6NC98 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.59□□□□□ -1.84
CCDC88BA6NC98 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 SCARNA17.1-201ENST00000516211 143 ntBASIC3.58□□□□□ -1.84
CCDC88BA6NC98 SCARNA17.2-201ENST00000516334 143 ntBASIC3.58□□□□□ -1.84
CCDC88BA6NC98 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 AP001004.1-201ENST00000582468 324 ntBASIC3.58□□□□□ -1.84
CCDC88BA6NC98 SCARNA17.4-201ENST00000614296 143 ntBASIC3.58□□□□□ -1.84
CCDC88BA6NC98 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88BA6NC98 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88BA6NC98 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88BA6NC98 SAR1AP2-201ENST00000392696 594 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 AC005005.2-201ENST00000420779 380 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC88BA6NC98 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88BA6NC98 AP000705.1-201ENST00000454567 350 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 AC025181.1-201ENST00000477507 416 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 AC091917.2-201ENST00000505002 744 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 LRRC37A5P-203ENST00000580181 585 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 Y_RNA.783-201ENST00000613546 102 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88BA6NC98 RPL23AP61-201ENST00000623642 466 ntBASIC3.57□□□□□ -1.84
CCDC88BA6NC98 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88BA6NC98 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC88BA6NC98 WWP1P1-201ENST00000466609 2769 ntBASIC3.56□□□□□ -1.84
CCDC88BA6NC98 SNORA62.2-201ENST00000364672 152 ntBASIC3.56□□□□□ -1.84
CCDC88BA6NC98 AP000889.2-201ENST00000532684 490 ntBASIC3.56□□□□□ -1.84
CCDC88BA6NC98 AC060766.3-201ENST00000591442 263 ntBASIC3.56□□□□□ -1.84
CCDC88BA6NC98 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC88BA6NC98 RPL7P54-201ENST00000438336 674 ntBASIC3.55□□□□□ -1.84
CCDC88BA6NC98 NDUFS5P3-201ENST00000450668 321 ntBASIC3.55□□□□□ -1.84
CCDC88BA6NC98 RN7SKP210-201ENST00000459176 261 ntBASIC3.55□□□□□ -1.84
CCDC88BA6NC98 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC88BA6NC98 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CCDC88BA6NC98 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC88BA6NC98 AC093909.5-201ENST00000621839 1799 ntBASIC3.55□□□□□ -1.84
CCDC88BA6NC98 RN7SKP226-201ENST00000364912 300 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 RNU6-1140P-201ENST00000410517 106 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AL592045.1-201ENST00000429867 352 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC003989.2-201ENST00000440224 169 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AL591719.1-201ENST00000444669 744 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 FAM172BP-201ENST00000487497 1089 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 OR52A4P-203ENST00000498233 1014 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC120053.1-201ENST00000607706 736 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AL359198.2-201ENST00000611836 194 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC016542.2-201ENST00000624201 619 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC010680.1-201ENST00000590024 3590 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 RPL23AP70-201ENST00000483361 460 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC073387.2-201ENST00000604797 784 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC093673.2-201ENST00000609674 331 ntBASIC3.54□□□□□ -1.84
CCDC88BA6NC98 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CCDC88BA6NC98 AC092447.7-201ENST00000422212 1621 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC88BA6NC98 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC88BA6NC98 Y_RNA.140-201ENST00000363474 103 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 DHFRP5-201ENST00000406944 564 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 SPA17P1-201ENST00000416656 452 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 RPL7P53-201ENST00000421245 739 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC88BA6NC98 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC88BA6NC98 AC010198.2-201ENST00000550612 259 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 MIR4498-201ENST00000577599 66 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC88BA6NC98 AC010297.1-201ENST00000623948 149 ntBASIC3.53□□□□□ -1.84
CCDC88BA6NC98 NPM1P10-201ENST00000398310 865 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 RNA5SP239-201ENST00000410218 129 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 Y_RNA.595-201ENST00000410403 105 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 EI24P1-201ENST00000416584 867 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 SDR42E1P3-201ENST00000438345 502 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC88BA6NC98 RPL39P40-201ENST00000445481 146 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 FABP5P13-201ENST00000452144 328 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 AL445669.2-201ENST00000454425 421 ntBASIC3.52□□□□□ -1.85
CCDC88BA6NC98 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.51□□□□□ -1.85
CCDC88BA6NC98 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 RNU6ATAC38P-201ENST00000408119 126 ntBASIC3.51□□□□□ -1.85
CCDC88BA6NC98 AC108667.1-201ENST00000428618 249 ntBASIC3.51□□□□□ -1.85
CCDC88BA6NC98 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 USP9YP8-201ENST00000441913 500 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms