Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR130A-201ENST00000385274 89 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 MT-TW-201ENST00000387382 68 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 MIR1275-201ENST00000408770 80 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-516P-201ENST00000411381 104 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC243428.1-201ENST00000421099 264 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 USMG5P1-201ENST00000425964 177 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC099670.2-201ENST00000435130 321 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 HIGD1AP11-201ENST00000438361 280 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 EEF1B2P3-201ENST00000447718 678 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC005008.1-201ENST00000456151 612 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC068228.1-201ENST00000461723 211 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RN7SL193P-201ENST00000491708 276 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RN7SL57P-201ENST00000493687 290 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LSM3P4-201ENST00000502948 309 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RBBP4P6-201ENST00000508098 202 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC108078.2-201ENST00000510750 236 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-1092P-201ENST00000516955 87 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 IGHV3-76-201ENST00000522465 295 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 MIR4293-201ENST00000584305 78 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AL451044.1-201ENST00000604867 238 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AL359091.2-201ENST00000609303 556 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AL021879.1-201ENST00000611756 288 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC091925.2-201ENST00000625059 256 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AP001052.1-201ENST00000626421 99 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 GVINP1-202ENST00000531871 7271 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNA5SP453-201ENST00000362503 119 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-1059P-201ENST00000363752 98 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNA5SP500-201ENST00000364486 119 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-432P-201ENST00000384196 109 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 SNORD51-201ENST00000384320 80 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.483-201ENST00000384380 101 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNF10P1-201ENST00000418589 369 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 PGBD4P6-201ENST00000421501 610 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RPL21P109-201ENST00000422213 475 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 MRPS18BP2-201ENST00000434310 759 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 CEACAMP1-201ENST00000434624 1035 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 SNORD127-201ENST00000458892 86 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 SNORD125-201ENST00000459538 96 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RPS23P2-201ENST00000463671 415 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC135721.1-201ENST00000497954 479 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC022447.4-201ENST00000504053 364 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 MTND1P19-201ENST00000511780 315 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-27P-201ENST00000516146 107 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RNA5SP340-201ENST00000517132 107 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC084121.1-201ENST00000533882 835 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC137627.1-201ENST00000545761 289 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RRN3P3-201ENST00000549207 578 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC063949.1-201ENST00000552900 865 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC026826.3-201ENST00000561747 158 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC002310.3-201ENST00000569728 723 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms