Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNA5SP514-201ENST00000363717 111 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 Y_RNA.551-201ENST00000384661 102 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AP000580.1-201ENST00000404439 358 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 EI24P4-201ENST00000423683 1078 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 HMGB1P9-201ENST00000429856 646 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 RPS27P18-201ENST00000431701 247 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AL133396.1-201ENST00000432048 687 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 MRPL48P1-201ENST00000445390 636 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 MTCO3P8-201ENST00000453691 755 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC093270.2-201ENST00000486157 792 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC018437.1-201ENST00000492214 406 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC105758.1-201ENST00000506038 399 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 BX510359.5-201ENST00000515651 304 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 RNU6-1023P-201ENST00000516137 106 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC012339.2-201ENST00000523996 453 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AP005639.1-201ENST00000526939 192 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC009643.1-201ENST00000532030 391 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 OR4H12P-201ENST00000556269 907 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 SDR42E1P2-201ENST00000614861 481 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AL355834.1-201ENST00000556602 3965 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AL731566.1-201ENST00000620490 1937 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AL121886.1-201ENST00000358609 435 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 RNU6-1062P-201ENST00000383908 107 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 RNU6-171P-201ENST00000384354 107 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 RNU6-1156P-201ENST00000410365 100 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC096921.1-201ENST00000411661 375 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 RBMY1KP-201ENST00000423480 476 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 HMGB1P27-201ENST00000431429 603 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 CFL1P1-202ENST00000432948 411 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC073063.1-201ENST00000434352 607 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 EEF1B2P6-201ENST00000445713 673 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 RPL12P20-201ENST00000475538 479 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC114728.1-201ENST00000488289 483 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 RN7SL184P-201ENST00000488308 297 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC083829.1-201ENST00000503756 657 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC108043.1-201ENST00000512696 574 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AL390726.5-202ENST00000564800 256 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 MIR5188-201ENST00000583467 113 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 AL355810.1-201ENST00000614629 552 ntBASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
LIMD1Q9UGP4 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC005183.1-201ENST00000603687 1979 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC005332.5-201ENST00000591222 2919 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 Y_RNA.117-201ENST00000363294 101 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 RNA5SP350-201ENST00000363298 111 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 SNORA20.1-201ENST00000364790 130 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms