Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC009464.1-201ENST00000615731 469 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 SNORD39.4-201ENST00000620099 78 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 U6.101-201ENST00000637707 76 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC244517.1-201ENST00000606030 2086 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC004925.1-201ENST00000624256 2706 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 CDR1-202ENST00000625883 1485 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AP002088.1-201ENST00000382740 395 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 U3.29-201ENST00000391296 212 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 SNRPEP2-201ENST00000397592 279 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AL357075.1-201ENST00000404107 726 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 MIR1183-201ENST00000408856 89 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 RNA5SP229-201ENST00000410809 99 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 MTCO3P12-201ENST00000416718 547 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC127526.1-201ENST00000417526 366 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 Z75741.1-201ENST00000446793 314 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 RPS24P6-201ENST00000452670 400 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 HMGN2P7-201ENST00000456186 273 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC010285.1-201ENST00000470580 392 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC106872.2-201ENST00000494303 480 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 ARL2BPP6-201ENST00000512757 439 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 RN7SKP31-201ENST00000516354 278 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AP001636.2-201ENST00000525517 696 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 OR4P1P-201ENST00000530808 1136 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 EEF1B2P4-201ENST00000551398 348 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 MIR4425-201ENST00000580572 84 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 BNIP3P24-201ENST00000593398 557 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AL031985.2-201ENST00000600955 480 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 XIAPP1-201ENST00000603162 600 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AL034351.1-201ENST00000605288 668 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 MIR7112-201ENST00000616126 65 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC018755.4-201ENST00000619715 454 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC022509.4-201ENST00000621404 572 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 AC120349.2-201ENST00000625002 298 ntBASIC3.34□□□□□ -1.87
LHX3Q9UBR4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.34□□□□□ -1.87
LHX3Q9UBR4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
LHX3Q9UBR4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 SNRPEP3-201ENST00000338402 276 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AL136310.1-201ENST00000404926 654 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 RNU6-55P-201ENST00000411092 107 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 RNU6-954P-201ENST00000411355 107 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 RHEBP3-201ENST00000411920 351 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 MTATP6P20-201ENST00000414147 562 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC093698.1-201ENST00000423843 571 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC006946.1-201ENST00000429106 328 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 NANOGP2-201ENST00000435391 727 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC092427.1-201ENST00000439177 601 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 snoU13.22-201ENST00000459428 104 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 VN1R17P-201ENST00000472048 1090 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC026412.2-201ENST00000512270 1075 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 RNU6-27P-201ENST00000516146 107 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 NDUFB9P3-201ENST00000521269 501 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 RPL23AP92-201ENST00000603609 255 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC073657.2-201ENST00000605661 303 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC006023.2-201ENST00000609916 167 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 AC109315.1-201ENST00000584143 1347 ntBASIC3.33□□□□□ -1.88
LHX3Q9UBR4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LHX3Q9UBR4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms