Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN1P58418 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.31□□□□□ -1.72
CLRN1P58418 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN1P58418 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CLRN1P58418 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN1P58418 SCN1A-220ENST00000641603 12506 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN1P58418 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN1P58418 NACAP2-201ENST00000318548 624 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN1P58418 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN1P58418 RNU6-845P-201ENST00000362578 103 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RN7SKP95-201ENST00000362860 303 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RNU4-73P-201ENST00000363164 141 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 Y_RNA.157-201ENST00000363638 102 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RNU4-76P-201ENST00000364509 141 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 Y_RNA.529-201ENST00000384586 119 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 Y_RNA.535-201ENST00000384612 99 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RNA5SP345-201ENST00000410646 108 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RNU6-373P-201ENST00000411247 98 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 E2F6P2-201ENST00000420708 748 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RPL36AP10-201ENST00000421785 322 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RPS12P5-201ENST00000423449 371 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 CKS1BP6-201ENST00000424932 240 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 PSMA2P3-201ENST00000429685 675 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 ATP5JP1-201ENST00000431631 322 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 OR4K11P-201ENST00000431829 904 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RPL36AP53-201ENST00000432891 316 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RPS17P8-201ENST00000434525 335 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC004938.1-201ENST00000438468 308 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN1P58418 HMGB3P21-201ENST00000452483 547 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AL356010.1-201ENST00000456364 102 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC063943.1-201ENST00000465434 453 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 RPL7AP6-201ENST00000477943 801 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RN7SL558P-201ENST00000497468 299 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 MRPS33P2-201ENST00000507850 322 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN1P58418 AC007424.1-203ENST00000554613 687 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 RPL21P12-201ENST00000559810 515 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN1P58418 OR4K8P-201ENST00000578842 1048 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC010525.2-201ENST00000590920 195 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AL121932.1-201ENST00000605542 214 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC004908.2-201ENST00000609090 574 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN1P58418 AL022401.1-201ENST00000619498 108 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AL136221.1-201ENST00000621449 509 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AP001784.1-201ENST00000624107 428 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 MIR4496-201ENST00000635896 61 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 AC100810.6-201ENST00000638068 285 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 AL731566.1-201ENST00000620490 1937 ntBASIC4.3□□□□□ -1.72
CLRN1P58418 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN1P58418 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN1P58418 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN1P58418 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CLRN1P58418 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN1P58418 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN1P58418 NEAT1-202ENST00000501122 22743 ntBASIC4.29□□□□□ -1.72
CLRN1P58418 AC109780.1-201ENST00000451768 1344 ntBASIC4.29□□□□□ -1.72
CLRN1P58418 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN1P58418 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLRN1P58418 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
CLRN1P58418 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.29□□□□□ -1.72
CLRN1P58418 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.29□□□□□ -1.72
CLRN1P58418 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.29□□□□□ -1.72
CLRN1P58418 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CLRN1P58418 Y_RNA.22-201ENST00000362492 102 ntBASIC4.29□□□□□ -1.72
CLRN1P58418 RNU6-989P-201ENST00000362756 107 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms