Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH6P52701 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH6P52701 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH6P52701 AC007336.1-201ENST00000576365 3828 ntBASIC3.62□□□□□ -1.83
MSH6P52701 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSH6P52701 RPL21P132-201ENST00000331267 462 ntBASIC3.62□□□□□ -1.83
MSH6P52701 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSH6P52701 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH6P52701 RPL31P52-201ENST00000407532 367 ntBASIC3.62□□□□□ -1.83
MSH6P52701 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.62□□□□□ -1.83
MSH6P52701 RPLP0P7-201ENST00000416050 667 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH6P52701 AL137014.1-201ENST00000420490 1226 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH6P52701 AL031663.1-201ENST00000437445 219 ntBASIC3.62□□□□□ -1.83
MSH6P52701 RPS29P6-201ENST00000438196 145 ntBASIC3.62□□□□□ -1.83
MSH6P52701 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH6P52701 MTND2P8-201ENST00000450555 1025 ntBASIC3.62□□□□□ -1.83
MSH6P52701 CABYRP1-201ENST00000465493 1045 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AC087385.1-201ENST00000475062 312 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AC093663.2-201ENST00000484625 313 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.62□□□□□ -1.83
MSH6P52701 RNA5SP309-201ENST00000516670 106 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH6P52701 RANP3-201ENST00000530970 276 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.62□□□□□ -1.83
MSH6P52701 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH6P52701 AC004775.1-201ENST00000607389 753 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AC103710.3-201ENST00000608157 948 ntBASIC3.62□□□□□ -1.83
MSH6P52701 AC107294.3-201ENST00000609211 526 ntBASIC3.62□□□□□ -1.83
MSH6P52701 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
MSH6P52701 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH6P52701 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH6P52701 GTF2H2B-203ENST00000508065 1432 ntBASIC3.61□□□□□ -1.83
MSH6P52701 AC008264.2-201ENST00000610193 3731 ntBASIC3.61□□□□□ -1.83
MSH6P52701 AL118496.1-201ENST00000440201 1812 ntBASIC3.61□□□□□ -1.83
MSH6P52701 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH6P52701 AL589826.1-201ENST00000340697 249 ntBASIC3.61□□□□□ -1.83
MSH6P52701 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH6P52701 TPMTP4-201ENST00000450749 678 ntBASIC3.61□□□□□ -1.83
MSH6P52701 GAPDHP39-201ENST00000481866 979 ntBASIC3.61□□□□□ -1.83
MSH6P52701 RN7SL636P-201ENST00000497504 294 ntBASIC3.61□□□□□ -1.83
MSH6P52701 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSH6P52701 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH6P52701 OR11H5P-201ENST00000554039 926 ntBASIC3.61□□□□□ -1.83
MSH6P52701 CKS1BP1-201ENST00000555221 240 ntBASIC3.61□□□□□ -1.83
MSH6P52701 AL731537.2-201ENST00000561565 951 ntBASIC3.61□□□□□ -1.83
MSH6P52701 AC004943.3-201ENST00000624116 600 ntBASIC3.61□□□□□ -1.83
MSH6P52701 AC079228.1-201ENST00000624774 1049 ntBASIC3.61□□□□□ -1.83
MSH6P52701 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH6P52701 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
MSH6P52701 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH6P52701 RNF6P1-201ENST00000444889 1784 ntBASIC3.6□□□□□ -1.83
MSH6P52701 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
MSH6P52701 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH6P52701 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH6P52701 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH6P52701 RNU1-73P-201ENST00000383971 164 ntBASIC3.6□□□□□ -1.83
MSH6P52701 AL451074.5-201ENST00000415894 435 ntBASIC3.6□□□□□ -1.83
MSH6P52701 MTCO3P4-201ENST00000419236 787 ntBASIC3.6□□□□□ -1.83
MSH6P52701 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH6P52701 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH6P52701 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH6P52701 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH6P52701 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH6P52701 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH6P52701 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH6P52701 AC004923.2-201ENST00000529649 369 ntBASIC3.6□□□□□ -1.83
MSH6P52701 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH6P52701 AC040174.2-201ENST00000602701 465 ntBASIC3.6□□□□□ -1.83
MSH6P52701 AC006254.3-201ENST00000603353 884 ntBASIC3.6□□□□□ -1.83
MSH6P52701 MIR7111-201ENST00000619751 72 ntBASIC3.6□□□□□ -1.83
MSH6P52701 Z99129.2-201ENST00000619967 314 ntBASIC3.6□□□□□ -1.83
MSH6P52701 C2orf27A-204ENST00000623058 969 ntBASIC3.6□□□□□ -1.83
MSH6P52701 AP003072.4-201ENST00000624580 310 ntBASIC3.6□□□□□ -1.83
MSH6P52701 AC092184.1-201ENST00000625042 715 ntBASIC3.6□□□□□ -1.83
MSH6P52701 AC004925.1-201ENST00000624256 2706 ntBASIC3.6□□□□□ -1.83
MSH6P52701 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
MSH6P52701 MTND4P21-201ENST00000453886 1357 ntBASIC3.59□□□□□ -1.83
MSH6P52701 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
MSH6P52701 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
MSH6P52701 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.59□□□□□ -1.83
MSH6P52701 Y_RNA.4-201ENST00000362333 112 ntBASIC3.59□□□□□ -1.83
MSH6P52701 MIR181A2-201ENST00000384863 110 ntBASIC3.59□□□□□ -1.83
MSH6P52701 TAF9BP2-201ENST00000400856 499 ntBASIC3.59□□□□□ -1.83
MSH6P52701 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.59□□□□□ -1.83
MSH6P52701 USP9YP7-201ENST00000436723 430 ntBASIC3.59□□□□□ -1.83
MSH6P52701 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
MSH6P52701 USP9YP32-201ENST00000452432 430 ntBASIC3.59□□□□□ -1.83
MSH6P52701 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
MSH6P52701 RPL30P9-201ENST00000465586 330 ntBASIC3.59□□□□□ -1.83
MSH6P52701 RPL21P18-201ENST00000469899 480 ntBASIC3.59□□□□□ -1.83
MSH6P52701 RN7SL283P-201ENST00000489055 303 ntBASIC3.59□□□□□ -1.83
MSH6P52701 CKS1BP2-201ENST00000497342 240 ntBASIC3.59□□□□□ -1.83
MSH6P52701 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
MSH6P52701 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.59□□□□□ -1.83
MSH6P52701 NDUFB4P9-201ENST00000511646 388 ntBASIC3.59□□□□□ -1.83
MSH6P52701 IGKV2-36-201ENST00000519999 223 ntBASIC3.59□□□□□ -1.83
MSH6P52701 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.59□□□□□ -1.83
MSH6P52701 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms