Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC011494.1-201ENST00000596454 237 ntBASIC3.6□□□□□ -1.83
CUX1P39880 CU459211.1-201ENST00000635667 749 ntBASIC3.6□□□□□ -1.83
CUX1P39880 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.6□□□□□ -1.83
CUX1P39880 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CUX1P39880 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CUX1P39880 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CUX1P39880 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.6□□□□□ -1.83
CUX1P39880 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CUX1P39880 RNU6-984P-201ENST00000363236 109 ntBASIC3.6□□□□□ -1.83
CUX1P39880 U8.8-201ENST00000365399 135 ntBASIC3.6□□□□□ -1.83
CUX1P39880 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC3.6□□□□□ -1.83
CUX1P39880 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.6□□□□□ -1.83
CUX1P39880 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.6□□□□□ -1.83
CUX1P39880 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.6□□□□□ -1.83
CUX1P39880 AL162388.1-201ENST00000450912 352 ntBASIC3.6□□□□□ -1.83
CUX1P39880 AC117522.2-201ENST00000510049 657 ntBASIC3.6□□□□□ -1.83
CUX1P39880 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.6□□□□□ -1.83
CUX1P39880 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.6□□□□□ -1.83
CUX1P39880 BX005019.1-201ENST00000561881 1810 ntBASIC3.59□□□□□ -1.83
CUX1P39880 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CUX1P39880 EIF2S2P4-201ENST00000461070 984 ntBASIC3.59□□□□□ -1.84
CUX1P39880 AC026412.2-201ENST00000512270 1075 ntBASIC3.59□□□□□ -1.84
CUX1P39880 RNU6-1053P-201ENST00000515930 101 ntBASIC3.59□□□□□ -1.84
CUX1P39880 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CUX1P39880 HMGB3P26-201ENST00000560051 582 ntBASIC3.59□□□□□ -1.84
CUX1P39880 MIR4781-201ENST00000585250 76 ntBASIC3.59□□□□□ -1.84
CUX1P39880 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
CUX1P39880 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CUX1P39880 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
CUX1P39880 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.58□□□□□ -1.84
CUX1P39880 SNORA25.6-201ENST00000364121 118 ntBASIC3.58□□□□□ -1.84
CUX1P39880 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.58□□□□□ -1.84
CUX1P39880 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.58□□□□□ -1.84
CUX1P39880 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.58□□□□□ -1.84
CUX1P39880 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.58□□□□□ -1.84
CUX1P39880 AL035551.1-201ENST00000446931 348 ntBASIC3.58□□□□□ -1.84
CUX1P39880 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.58□□□□□ -1.84
CUX1P39880 AC092045.1-201ENST00000495716 1231 ntBASIC3.58□□□□□ -1.84
CUX1P39880 SCARNA17.1-201ENST00000516211 143 ntBASIC3.58□□□□□ -1.84
CUX1P39880 SCARNA17.2-201ENST00000516334 143 ntBASIC3.58□□□□□ -1.84
CUX1P39880 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.58□□□□□ -1.84
CUX1P39880 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CUX1P39880 SCARNA17.4-201ENST00000614296 143 ntBASIC3.58□□□□□ -1.84
CUX1P39880 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CUX1P39880 MIR489-201ENST00000384923 84 ntBASIC3.57□□□□□ -1.84
CUX1P39880 AC072039.1-201ENST00000477611 581 ntBASIC3.57□□□□□ -1.84
CUX1P39880 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.57□□□□□ -1.84
CUX1P39880 AC023043.3-201ENST00000593113 385 ntBASIC3.57□□□□□ -1.84
CUX1P39880 AL160237.3-201ENST00000604114 1013 ntBASIC3.57□□□□□ -1.84
CUX1P39880 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CUX1P39880 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.57□□□□□ -1.84
CUX1P39880 CDC27P2-201ENST00000425026 1922 ntBASIC3.57□□□□□ -1.84
CUX1P39880 RNU1-51P-201ENST00000365345 176 ntBASIC3.56□□□□□ -1.84
CUX1P39880 SNORA79B-201ENST00000410557 148 ntBASIC3.56□□□□□ -1.84
CUX1P39880 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.56□□□□□ -1.84
CUX1P39880 AC013470.3-201ENST00000420252 1194 ntBASIC3.56□□□□□ -1.84
CUX1P39880 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.56□□□□□ -1.84
CUX1P39880 AC090695.1-201ENST00000561269 1222 ntBASIC3.56□□□□□ -1.84
CUX1P39880 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.56□□□□□ -1.84
CUX1P39880 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.56□□□□□ -1.84
CUX1P39880 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.56□□□□□ -1.84
CUX1P39880 CYP3A51P-201ENST00000633513 256 ntBASIC3.56□□□□□ -1.84
CUX1P39880 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.56□□□□□ -1.84
CUX1P39880 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.56□□□□□ -1.84
CUX1P39880 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CUX1P39880 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CUX1P39880 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CUX1P39880 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.55□□□□□ -1.84
CUX1P39880 TRBV26-201ENST00000456572 344 ntBASIC3.55□□□□□ -1.84
CUX1P39880 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.55□□□□□ -1.84
CUX1P39880 MIR6132-201ENST00000622083 109 ntBASIC3.55□□□□□ -1.84
CUX1P39880 AC093775.1-201ENST00000624154 1868 ntBASIC3.55□□□□□ -1.84
CUX1P39880 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.55□□□□□ -1.84
CUX1P39880 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CUX1P39880 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CUX1P39880 Y_RNA.355-201ENST00000365462 98 ntBASIC3.54□□□□□ -1.84
CUX1P39880 RNU1-138P-201ENST00000384093 164 ntBASIC3.54□□□□□ -1.84
CUX1P39880 NPM1P10-201ENST00000398310 865 ntBASIC3.54□□□□□ -1.84
CUX1P39880 RN7SKP123-201ENST00000410732 291 ntBASIC3.54□□□□□ -1.84
CUX1P39880 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.54□□□□□ -1.84
CUX1P39880 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.54□□□□□ -1.84
CUX1P39880 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CUX1P39880 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.54□□□□□ -1.84
CUX1P39880 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CUX1P39880 OR4R2P-201ENST00000530815 597 ntBASIC3.54□□□□□ -1.84
CUX1P39880 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CUX1P39880 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.54□□□□□ -1.84
CUX1P39880 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.54□□□□□ -1.84
CUX1P39880 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CUX1P39880 MTND4P35-201ENST00000604257 1375 ntBASIC3.54□□□□□ -1.84
CUX1P39880 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
CUX1P39880 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CUX1P39880 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CUX1P39880 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.54□□□□□ -1.84
CUX1P39880 SNORA48.3-201ENST00000391081 134 ntBASIC3.54□□□□□ -1.84
CUX1P39880 MTCYBP14-201ENST00000457471 715 ntBASIC3.54□□□□□ -1.84
CUX1P39880 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.54□□□□□ -1.84
CUX1P39880 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.54□□□□□ -1.84
CUX1P39880 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.54□□□□□ -1.84
CUX1P39880 AMZ2P1-203ENST00000565833 850 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms