Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MIR3074-201ENST00000384885 81 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC007066.1-201ENST00000392902 381 ntBASIC4.31□□□□□ -1.72
CIITAP33076 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CIITAP33076 RN7SKP142-201ENST00000411236 328 ntBASIC4.31□□□□□ -1.72
CIITAP33076 MTCO2P34-201ENST00000421994 607 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 MED14P1-201ENST00000430517 648 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC087650.1-201ENST00000431445 468 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.31□□□□□ -1.72
CIITAP33076 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.31□□□□□ -1.72
CIITAP33076 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 MUPP-201ENST00000438111 566 ntBASIC4.31□□□□□ -1.72
CIITAP33076 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CIITAP33076 RPS26P15-201ENST00000488067 348 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.31□□□□□ -1.72
CIITAP33076 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.31□□□□□ -1.72
CIITAP33076 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 AC079140.3-201ENST00000511111 550 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.31□□□□□ -1.72
CIITAP33076 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 DEFB131D-201ENST00000526803 184 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.31□□□□□ -1.72
CIITAP33076 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.31□□□□□ -1.72
CIITAP33076 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.31□□□□□ -1.72
CIITAP33076 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.31□□□□□ -1.72
CIITAP33076 MIR5187-201ENST00000583479 76 ntBASIC4.31□□□□□ -1.72
CIITAP33076 SNORD39.3-201ENST00000584451 71 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC078795.2-201ENST00000602835 1252 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AL137849.1-201ENST00000604767 169 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC092354.2-201ENST00000607786 514 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AC239868.4-201ENST00000608318 671 ntBASIC4.31□□□□□ -1.72
CIITAP33076 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.31□□□□□ -1.72
CIITAP33076 AL356266.1-201ENST00000623311 483 ntBASIC4.31□□□□□ -1.72
CIITAP33076 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CIITAP33076 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CIITAP33076 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.3□□□□□ -1.72
CIITAP33076 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CIITAP33076 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.3□□□□□ -1.72
CIITAP33076 OR5BR1P-201ENST00000524992 1330 ntBASIC4.3□□□□□ -1.72
CIITAP33076 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.3□□□□□ -1.72
CIITAP33076 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CIITAP33076 MIR23A-201ENST00000385245 73 ntBASIC4.3□□□□□ -1.72
CIITAP33076 SOD2P1-201ENST00000396543 562 ntBASIC4.3□□□□□ -1.72
CIITAP33076 DEFB108C-201ENST00000400154 252 ntBASIC4.3□□□□□ -1.72
CIITAP33076 HLFP1-201ENST00000402375 499 ntBASIC4.3□□□□□ -1.72
CIITAP33076 SSXP10-201ENST00000402595 565 ntBASIC4.3□□□□□ -1.72
CIITAP33076 RN7SKP202-201ENST00000410439 330 ntBASIC4.3□□□□□ -1.72
CIITAP33076 RPS15AP38-201ENST00000413110 372 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.3□□□□□ -1.72
CIITAP33076 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.3□□□□□ -1.72
CIITAP33076 AL139247.1-201ENST00000422768 325 ntBASIC4.3□□□□□ -1.72
CIITAP33076 MTND4P6-201ENST00000438297 472 ntBASIC4.3□□□□□ -1.72
CIITAP33076 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 COX6CP2-201ENST00000444980 225 ntBASIC4.3□□□□□ -1.72
CIITAP33076 USP9YP29-201ENST00000445112 563 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 RPL36AP33-201ENST00000450395 310 ntBASIC4.3□□□□□ -1.72
CIITAP33076 RPL26P28-201ENST00000451325 435 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AP000926.1-201ENST00000479573 241 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC006499.5-201ENST00000505037 514 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC020593.1-201ENST00000507399 299 ntBASIC4.3□□□□□ -1.72
CIITAP33076 PTGES3P3-201ENST00000511479 482 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 RNU6-583P-201ENST00000516012 92 ntBASIC4.3□□□□□ -1.72
CIITAP33076 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.3□□□□□ -1.72
CIITAP33076 AC007991.1-201ENST00000522680 631 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC090502.2-201ENST00000549267 280 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 AC034105.4-201ENST00000568304 277 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 AL596327.1-201ENST00000603629 213 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC025594.3-201ENST00000613068 790 ntBASIC4.3□□□□□ -1.72
CIITAP33076 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.3□□□□□ -1.72
CIITAP33076 AC006927.3-201ENST00000638789 384 ntBASIC4.3□□□□□ -1.72
CIITAP33076 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
CIITAP33076 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CIITAP33076 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.3□□□□□ -1.72
CIITAP33076 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.3□□□□□ -1.72
CIITAP33076 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CIITAP33076 MTND5P3-201ENST00000438536 1800 ntBASIC4.3□□□□□ -1.72
CIITAP33076 AC024560.2-201ENST00000507981 1497 ntBASIC4.3□□□□□ -1.72
CIITAP33076 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CIITAP33076 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.29□□□□□ -1.72
CIITAP33076 LINC02471-203ENST00000641941 4752 ntBASIC4.29□□□□□ -1.72
CIITAP33076 ZNF37BP-203ENST00000452306 1352 ntBASIC4.29□□□□□ -1.72
CIITAP33076 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.29□□□□□ -1.72
CIITAP33076 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CIITAP33076 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.29□□□□□ -1.72
CIITAP33076 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms