Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX4Q9UIU6 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 AC133561.5-201ENST00000635547 218 ntBASIC20.53■□□□□ 0.88
SIX4Q9UIU6 AC097493.4-201ENST00000641197 219 ntBASIC20.53■□□□□ 0.88
SIX4Q9UIU6 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX4Q9UIU6 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 INGX-201ENST00000359239 846 ntBASIC20.52■□□□□ 0.88
SIX4Q9UIU6 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 NAPSB-206ENST00000562112 1266 ntBASIC20.52■□□□□ 0.88
SIX4Q9UIU6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SIX4Q9UIU6 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX4Q9UIU6 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 TSPY14P-201ENST00000303979 915 ntBASIC20.51■□□□□ 0.87
SIX4Q9UIU6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 ECEL1P3-201ENST00000427961 737 ntBASIC20.51■□□□□ 0.87
SIX4Q9UIU6 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms