Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SPDYE13P-201ENST00000445314 798 ntBASIC24.42■■□□□ 1.5
USP42Q9H9J4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 AL691432.3-201ENST00000621860 400 ntBASIC24.42■■□□□ 1.5
USP42Q9H9J4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 AC112907.3-201ENST00000577781 2400 ntBASIC24.41■■□□□ 1.5
USP42Q9H9J4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 LINC01311-201ENST00000565162 1445 ntBASIC24.41■■□□□ 1.5
USP42Q9H9J4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
USP42Q9H9J4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP42Q9H9J4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
USP42Q9H9J4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP42Q9H9J4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP42Q9H9J4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP42Q9H9J4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP42Q9H9J4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP42Q9H9J4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC24.39■■□□□ 1.5
USP42Q9H9J4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP42Q9H9J4 KRT8P11-201ENST00000409686 1436 ntBASIC24.39■■□□□ 1.5
USP42Q9H9J4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
USP42Q9H9J4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
USP42Q9H9J4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP42Q9H9J4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP42Q9H9J4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP42Q9H9J4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
USP42Q9H9J4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP42Q9H9J4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC24.39■■□□□ 1.49
USP42Q9H9J4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC24.39■■□□□ 1.49
USP42Q9H9J4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
USP42Q9H9J4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP42Q9H9J4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP42Q9H9J4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC24.39■■□□□ 1.49
USP42Q9H9J4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC24.39■■□□□ 1.49
USP42Q9H9J4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 NPAP1P7-201ENST00000613027 823 ntBASIC24.38■■□□□ 1.49
USP42Q9H9J4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP42Q9H9J4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
USP42Q9H9J4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP42Q9H9J4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP42Q9H9J4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC24.37■■□□□ 1.49
USP42Q9H9J4 TSPY21P-201ENST00000433481 731 ntBASIC24.37■■□□□ 1.49
USP42Q9H9J4 TSPY23P-201ENST00000440136 739 ntBASIC24.37■■□□□ 1.49
USP42Q9H9J4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms