Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH1Q08174 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDH1Q08174 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PCDH1Q08174 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH1Q08174 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH1Q08174 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH1Q08174 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH1Q08174 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 TNXA-203ENST00000507684 2038 ntBASIC18.5■□□□□ 0.55
PCDH1Q08174 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PCDH1Q08174 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PCDH1Q08174 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 KRT8P41-201ENST00000533985 1514 ntBASIC18.5■□□□□ 0.55
PCDH1Q08174 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDH1Q08174 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDH1Q08174 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDH1Q08174 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.5■□□□□ 0.55
PCDH1Q08174 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDH1Q08174 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
PCDH1Q08174 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDH1Q08174 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 IRX1P1-201ENST00000438849 1838 ntBASIC18.5■□□□□ 0.55
PCDH1Q08174 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.5■□□□□ 0.55
PCDH1Q08174 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PCDH1Q08174 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH1Q08174 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PCDH1Q08174 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDH1Q08174 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH1Q08174 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDH1Q08174 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PCDH1Q08174 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH1Q08174 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 NIFKP9-201ENST00000419265 221 ntBASIC18.49■□□□□ 0.55
PCDH1Q08174 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 Z85996.1-201ENST00000494644 937 ntBASIC18.49■□□□□ 0.55
PCDH1Q08174 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.49■□□□□ 0.55
PCDH1Q08174 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDH1Q08174 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH1Q08174 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH1Q08174 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDH1Q08174 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PCDH1Q08174 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PCDH1Q08174 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PCDH1Q08174 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH1Q08174 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDH1Q08174 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDH1Q08174 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDH1Q08174 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.48■□□□□ 0.55
PCDH1Q08174 ITM2C-210ENST00000620962 501 ntBASIC18.48■□□□□ 0.55
PCDH1Q08174 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH1Q08174 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH1Q08174 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH1Q08174 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH1Q08174 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDH1Q08174 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDH1Q08174 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDH1Q08174 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
PCDH1Q08174 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PCDH1Q08174 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDH1Q08174 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDH1Q08174 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDH1Q08174 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms