Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CXCL12P48061 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
CXCL12P48061 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.11■□□□□ 0.65
CXCL12P48061 AIRN-201ENST00000601203 4374 ntBASIC19.11■□□□□ 0.65
CXCL12P48061 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.11■□□□□ 0.65
CXCL12P48061 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.11■□□□□ 0.65
CXCL12P48061 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 AL162741.1-201ENST00000565563 1558 ntBASIC19.11■□□□□ 0.65
CXCL12P48061 AC009237.14-201ENST00000609975 1594 ntBASIC19.11■□□□□ 0.65
CXCL12P48061 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CXCL12P48061 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.11■□□□□ 0.65
CXCL12P48061 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.11■□□□□ 0.65
CXCL12P48061 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CXCL12P48061 CHCHD2P8-201ENST00000429873 447 ntBASIC19.11■□□□□ 0.65
CXCL12P48061 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CXCL12P48061 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL12P48061 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.11■□□□□ 0.65
CXCL12P48061 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.1■□□□□ 0.65
CXCL12P48061 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.1■□□□□ 0.65
CXCL12P48061 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CXCL12P48061 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CXCL12P48061 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 KRT18P1-202ENST00000452408 1331 ntBASIC19.1■□□□□ 0.65
CXCL12P48061 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.1■□□□□ 0.65
CXCL12P48061 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
CXCL12P48061 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.1■□□□□ 0.65
CXCL12P48061 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.1■□□□□ 0.65
CXCL12P48061 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CXCL12P48061 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.1■□□□□ 0.65
CXCL12P48061 LINC01711-201ENST00000598340 967 ntBASIC19.1■□□□□ 0.65
CXCL12P48061 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CXCL12P48061 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CXCL12P48061 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CXCL12P48061 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CXCL12P48061 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.1■□□□□ 0.65
CXCL12P48061 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL12P48061 AC026310.3-201ENST00000625186 2373 ntBASIC19.1■□□□□ 0.65
CXCL12P48061 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 TSPY19P-201ENST00000418461 509 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 TSPY18P-201ENST00000441642 509 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 EMBP1-201ENST00000458200 901 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 AC009078.2-202ENST00000463353 338 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.09■□□□□ 0.65
CXCL12P48061 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 AL121772.3-201ENST00000610840 674 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL12P48061 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 AC012676.1-201ENST00000574705 1949 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 AC093525.10-201ENST00000625130 1569 ntBASIC19.09■□□□□ 0.65
CXCL12P48061 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL12P48061 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.09■□□□□ 0.65
CXCL12P48061 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms